miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5958 5' -57.6 NC_001806.1 + 80024 0.67 0.763759
Target:  5'- gGGCCgCaGCGGCGCCUuacGCGCcccgCUGUCGc -3'
miRNA:   3'- -CCGG-GaUGUCGUGGA---CGCGa---GGUAGU- -5'
5958 5' -57.6 NC_001806.1 + 95909 0.67 0.763759
Target:  5'- gGGCuCCUGCcGCACCUGaaggaggaGCUCgcccgguuCAUCAu -3'
miRNA:   3'- -CCG-GGAUGuCGUGGACg-------CGAG--------GUAGU- -5'
5958 5' -57.6 NC_001806.1 + 726 0.68 0.744609
Target:  5'- aGCCCUcccCGGCGCgUcccGCGCUCCcUCGg -3'
miRNA:   3'- cCGGGAu--GUCGUGgA---CGCGAGGuAGU- -5'
5958 5' -57.6 NC_001806.1 + 103283 0.68 0.7417
Target:  5'- cGGCgaCUAUgaAGCGCCUGUGUUCCcagacguccagagcGUCAa -3'
miRNA:   3'- -CCGg-GAUG--UCGUGGACGCGAGG--------------UAGU- -5'
5958 5' -57.6 NC_001806.1 + 51417 0.68 0.734882
Target:  5'- cGCCUUGCGGCA---GCGCUCCGa-- -3'
miRNA:   3'- cCGGGAUGUCGUggaCGCGAGGUagu -5'
5958 5' -57.6 NC_001806.1 + 68362 0.68 0.734882
Target:  5'- cGGCCgCUGCuggaaCACCUgugcGCGCUCCAcCGg -3'
miRNA:   3'- -CCGG-GAUGuc---GUGGA----CGCGAGGUaGU- -5'
5958 5' -57.6 NC_001806.1 + 23117 0.68 0.731946
Target:  5'- gGGCCCcGCGcugccgcgggacccGCGCCUGCcgaGCUCCG-CGg -3'
miRNA:   3'- -CCGGGaUGU--------------CGUGGACG---CGAGGUaGU- -5'
5958 5' -57.6 NC_001806.1 + 86158 0.68 0.705205
Target:  5'- cGGUCCUugauggACGGgACCUGCGCgcggcgggCCAUgAg -3'
miRNA:   3'- -CCGGGA------UGUCgUGGACGCGa-------GGUAgU- -5'
5958 5' -57.6 NC_001806.1 + 72138 0.68 0.705205
Target:  5'- cGGCCCgugGGC-CCUGCGCcCCcuGUCGu -3'
miRNA:   3'- -CCGGGaugUCGuGGACGCGaGG--UAGU- -5'
5958 5' -57.6 NC_001806.1 + 49449 0.68 0.705205
Target:  5'- aGGCCCgGCAGgggggaUACCUGgGUcCCGUCGa -3'
miRNA:   3'- -CCGGGaUGUC------GUGGACgCGaGGUAGU- -5'
5958 5' -57.6 NC_001806.1 + 37596 0.68 0.695177
Target:  5'- uGGCCCgcCAGCACCgGgGC-CCAg-- -3'
miRNA:   3'- -CCGGGauGUCGUGGaCgCGaGGUagu -5'
5958 5' -57.6 NC_001806.1 + 121477 0.69 0.685097
Target:  5'- gGGCCauggACAGCgACCUGggguCGCUCUGUCc -3'
miRNA:   3'- -CCGGga--UGUCG-UGGAC----GCGAGGUAGu -5'
5958 5' -57.6 NC_001806.1 + 70599 0.69 0.674974
Target:  5'- cGuCCCUcGCga-GCCUGCGUUCCGUCAu -3'
miRNA:   3'- cC-GGGA-UGucgUGGACGCGAGGUAGU- -5'
5958 5' -57.6 NC_001806.1 + 30142 0.69 0.664815
Target:  5'- aGGCCCcccGCGGCGCCcaUGCcagGCUCCGc-- -3'
miRNA:   3'- -CCGGGa--UGUCGUGG--ACG---CGAGGUagu -5'
5958 5' -57.6 NC_001806.1 + 65470 0.69 0.634216
Target:  5'- gGGUCCUgGgGGCGCCcGCGCaccacgucUCCGUCGa -3'
miRNA:   3'- -CCGGGA-UgUCGUGGaCGCG--------AGGUAGU- -5'
5958 5' -57.6 NC_001806.1 + 3471 0.7 0.613794
Target:  5'- cGGCCUgggcGCGGCGCCcgGCGUcgUCGUCGg -3'
miRNA:   3'- -CCGGGa---UGUCGUGGa-CGCGa-GGUAGU- -5'
5958 5' -57.6 NC_001806.1 + 96657 0.7 0.6036
Target:  5'- -aCCCUGCgcgAGCACCUGCGggaCAUCAa -3'
miRNA:   3'- ccGGGAUG---UCGUGGACGCgagGUAGU- -5'
5958 5' -57.6 NC_001806.1 + 148850 0.7 0.583282
Target:  5'- cGCCCUGCGGCcCCaGCaGCcCCGUCu -3'
miRNA:   3'- cCGGGAUGUCGuGGaCG-CGaGGUAGu -5'
5958 5' -57.6 NC_001806.1 + 1918 0.71 0.573173
Target:  5'- cGGCCCgaggcCAGCACCgugcgGCGCaggUCCcgCGc -3'
miRNA:   3'- -CCGGGau---GUCGUGGa----CGCG---AGGuaGU- -5'
5958 5' -57.6 NC_001806.1 + 56305 0.71 0.573173
Target:  5'- aGCCC--CAGCACCUGCGCcaacgaaaUCCA-CAc -3'
miRNA:   3'- cCGGGauGUCGUGGACGCG--------AGGUaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.