miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5959 3' -62.1 NC_001806.1 + 20720 0.66 0.615912
Target:  5'- --gGCCCGccggggggGCgGGGGGCCgGCGgccUCCGCu -3'
miRNA:   3'- cagCGGGU--------UGgCUCCCGG-CGC---AGGUG- -5'
5959 3' -62.1 NC_001806.1 + 144971 0.66 0.615912
Target:  5'- --gGCCCGGCCcGGGGCCccgGCGgacCCAa -3'
miRNA:   3'- cagCGGGUUGGcUCCCGG---CGCa--GGUg -5'
5959 3' -62.1 NC_001806.1 + 151062 0.66 0.615912
Target:  5'- -gCGCaCCcGCgCGGGGGUCGCGggggUCGCg -3'
miRNA:   3'- caGCG-GGuUG-GCUCCCGGCGCa---GGUG- -5'
5959 3' -62.1 NC_001806.1 + 18439 0.66 0.615912
Target:  5'- -cCGCCCcagAAUCGGauGGGCCcggGCGuUCCACg -3'
miRNA:   3'- caGCGGG---UUGGCU--CCCGG---CGC-AGGUG- -5'
5959 3' -62.1 NC_001806.1 + 32957 0.66 0.615912
Target:  5'- --gGCCCcgGGCCG-GGGCCccuuGgGUCCGCc -3'
miRNA:   3'- cagCGGG--UUGGCuCCCGG----CgCAGGUG- -5'
5959 3' -62.1 NC_001806.1 + 78606 0.66 0.615912
Target:  5'- cGUCGCCguGCCGGccGCCGCcacCCACc -3'
miRNA:   3'- -CAGCGGguUGGCUccCGGCGca-GGUG- -5'
5959 3' -62.1 NC_001806.1 + 148147 0.66 0.615912
Target:  5'- -cCGCCCGucaCGGGGGgCGCGgCgGCg -3'
miRNA:   3'- caGCGGGUug-GCUCCCgGCGCaGgUG- -5'
5959 3' -62.1 NC_001806.1 + 64826 0.66 0.610017
Target:  5'- -gUGCCCGuucccagacgugGCCGGGGGUccgaaagccccuccgCGCGUCC-Cg -3'
miRNA:   3'- caGCGGGU------------UGGCUCCCG---------------GCGCAGGuG- -5'
5959 3' -62.1 NC_001806.1 + 4176 0.66 0.60609
Target:  5'- -cCGCCCcggGGgCGGGGGCCcgGCGccgggCCACg -3'
miRNA:   3'- caGCGGG---UUgGCUCCCGG--CGCa----GGUG- -5'
5959 3' -62.1 NC_001806.1 + 139121 0.66 0.60609
Target:  5'- cUCGCCgcGCgGGGGGCUGaUGUCCGu -3'
miRNA:   3'- cAGCGGguUGgCUCCCGGC-GCAGGUg -5'
5959 3' -62.1 NC_001806.1 + 23312 0.67 0.596285
Target:  5'- --gGCCCGGCCGcccGGaGGCgGCGgcCCGCg -3'
miRNA:   3'- cagCGGGUUGGC---UC-CCGgCGCa-GGUG- -5'
5959 3' -62.1 NC_001806.1 + 143432 0.67 0.593348
Target:  5'- --gGCCCGGCCcGcgcucccaccccccGGGCCGUGUCCu- -3'
miRNA:   3'- cagCGGGUUGGcU--------------CCCGGCGCAGGug -5'
5959 3' -62.1 NC_001806.1 + 4049 0.67 0.586505
Target:  5'- cGUCGCCCAGCUcGGGcGCCcacaCGgCCGCc -3'
miRNA:   3'- -CAGCGGGUUGGcUCC-CGGc---GCaGGUG- -5'
5959 3' -62.1 NC_001806.1 + 37780 0.67 0.586505
Target:  5'- uUCGCuCCGggGCCGGGGcGCgGgGgUCCGCg -3'
miRNA:   3'- cAGCG-GGU--UGGCUCC-CGgCgC-AGGUG- -5'
5959 3' -62.1 NC_001806.1 + 96470 0.67 0.586505
Target:  5'- uUCcCCCGGCaCGccuGGGGUCGCGgCCGCg -3'
miRNA:   3'- cAGcGGGUUG-GC---UCCCGGCGCaGGUG- -5'
5959 3' -62.1 NC_001806.1 + 115843 0.67 0.586505
Target:  5'- --aGCCgCGAuuCCGAGGGCCGgGccCCAUa -3'
miRNA:   3'- cagCGG-GUU--GGCUCCCGGCgCa-GGUG- -5'
5959 3' -62.1 NC_001806.1 + 40986 0.67 0.576755
Target:  5'- cGUCGUCCGggggAUCGuGGGauGUGUCCAUg -3'
miRNA:   3'- -CAGCGGGU----UGGCuCCCggCGCAGGUG- -5'
5959 3' -62.1 NC_001806.1 + 148078 0.67 0.576755
Target:  5'- uGUgGCCCGaugggcGCCGAGGGgggCGCuGUCCGa -3'
miRNA:   3'- -CAgCGGGU------UGGCUCCCg--GCG-CAGGUg -5'
5959 3' -62.1 NC_001806.1 + 143606 0.67 0.570923
Target:  5'- gGUCcCCCGuuccCCGGGGGCCGUuaucuccagcgccccGUCCGg -3'
miRNA:   3'- -CAGcGGGUu---GGCUCCCGGCG---------------CAGGUg -5'
5959 3' -62.1 NC_001806.1 + 33134 0.67 0.567042
Target:  5'- -cCGCCgCggUCGGGGGCCccuCGUCC-Cg -3'
miRNA:   3'- caGCGG-GuuGGCUCCCGGc--GCAGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.