miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5959 5' -53.4 NC_001806.1 + 2719 0.67 0.922543
Target:  5'- ----cGCCCaGGGGGUCGgggCCCucGGCg -3'
miRNA:   3'- aauauUGGGgCCCCCAGUaa-GGG--UUG- -5'
5959 5' -53.4 NC_001806.1 + 4177 0.76 0.475717
Target:  5'- ----cGCCCCGGGGG-CGggggCCCGGCg -3'
miRNA:   3'- aauauUGGGGCCCCCaGUaa--GGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 6072 0.75 0.556142
Target:  5'- ---cGGCCCCGGGGG-CGggCCCGGg -3'
miRNA:   3'- aauaUUGGGGCCCCCaGUaaGGGUUg -5'
5959 5' -53.4 NC_001806.1 + 6343 0.68 0.890988
Target:  5'- ----cACCCCGGGGGcC---UCCGACg -3'
miRNA:   3'- aauauUGGGGCCCCCaGuaaGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 11715 0.7 0.801439
Target:  5'- --uUGACCCCGGGaGGUUGUgguuuuggaucUCCCGu- -3'
miRNA:   3'- aauAUUGGGGCCC-CCAGUA-----------AGGGUug -5'
5959 5' -53.4 NC_001806.1 + 18572 0.67 0.933399
Target:  5'- ---gGACCCgCGGGGuUCugggGUUUCCAGCg -3'
miRNA:   3'- aauaUUGGG-GCCCCcAG----UAAGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 21970 0.72 0.733561
Target:  5'- ---cAGCCCCGGcGGGUCGagCUgGACg -3'
miRNA:   3'- aauaUUGGGGCC-CCCAGUaaGGgUUG- -5'
5959 5' -53.4 NC_001806.1 + 26221 0.71 0.763414
Target:  5'- -----cCCCCGGGGGUCGcgCgCGGCc -3'
miRNA:   3'- aauauuGGGGCCCCCAGUaaGgGUUG- -5'
5959 5' -53.4 NC_001806.1 + 28947 0.67 0.922543
Target:  5'- ----cGCCCCGGaugucuGGGUguUUCCCuGCg -3'
miRNA:   3'- aauauUGGGGCC------CCCAguAAGGGuUG- -5'
5959 5' -53.4 NC_001806.1 + 29385 0.66 0.963533
Target:  5'- -cGUGACgCCCaGcGGGUCGUucagcaccaUCCCGAUc -3'
miRNA:   3'- aaUAUUG-GGGcC-CCCAGUA---------AGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 35097 0.7 0.801439
Target:  5'- -aAUGACCCCcGGGGUUAUaaaaggcgcgUCCCGu- -3'
miRNA:   3'- aaUAUUGGGGcCCCCAGUA----------AGGGUug -5'
5959 5' -53.4 NC_001806.1 + 35606 0.66 0.947788
Target:  5'- --uUGGCCCUGGcGGGUUAUUggCAACc -3'
miRNA:   3'- aauAUUGGGGCC-CCCAGUAAggGUUG- -5'
5959 5' -53.4 NC_001806.1 + 41908 0.66 0.9649
Target:  5'- -----cUCCCGGGGGUCAcgUUguguuugacguacucCCCGAUa -3'
miRNA:   3'- aauauuGGGGCCCCCAGU--AA---------------GGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 44847 0.67 0.938447
Target:  5'- -----gUCCCGGGGGcaaAUUCCCGc- -3'
miRNA:   3'- aauauuGGGGCCCCCag-UAAGGGUug -5'
5959 5' -53.4 NC_001806.1 + 49658 0.7 0.801439
Target:  5'- ---gAGCUCCGGGcGG-CAUUCCCGu- -3'
miRNA:   3'- aauaUUGGGGCCC-CCaGUAAGGGUug -5'
5959 5' -53.4 NC_001806.1 + 53938 0.66 0.947788
Target:  5'- ----uGCUCCauGGGGGUCGgaUCCCAGg -3'
miRNA:   3'- aauauUGGGG--CCCCCAGUa-AGGGUUg -5'
5959 5' -53.4 NC_001806.1 + 55525 0.7 0.801439
Target:  5'- ---gGGCCCgGGGGGUUuaGUggggcggCCCGACu -3'
miRNA:   3'- aauaUUGGGgCCCCCAG--UAa------GGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 56264 0.66 0.959954
Target:  5'- ---gGGCCCCGuccccGGGGUCcUUCCUg-- -3'
miRNA:   3'- aauaUUGGGGC-----CCCCAGuAAGGGuug -5'
5959 5' -53.4 NC_001806.1 + 71667 0.8 0.290774
Target:  5'- --cUAACCCCGGGGGUCcggUCCauaAACa -3'
miRNA:   3'- aauAUUGGGGCCCCCAGua-AGGg--UUG- -5'
5959 5' -53.4 NC_001806.1 + 77149 0.7 0.819514
Target:  5'- ---gGAgCUCGGGGGgcgCGUggCCCAACa -3'
miRNA:   3'- aauaUUgGGGCCCCCa--GUAa-GGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.