miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5959 5' -53.4 NC_001806.1 + 113649 0.67 0.916733
Target:  5'- ----uACCUCGGGGGagAccUUCCCGAg -3'
miRNA:   3'- aauauUGGGGCCCCCagU--AAGGGUUg -5'
5959 5' -53.4 NC_001806.1 + 142596 0.67 0.916733
Target:  5'- uUUAUAGCCgaGGGGGUC--UCgUAACg -3'
miRNA:   3'- -AAUAUUGGggCCCCCAGuaAGgGUUG- -5'
5959 5' -53.4 NC_001806.1 + 95433 0.68 0.904358
Target:  5'- ---gGGCCCgGGGGG-CAggggCCCGAg -3'
miRNA:   3'- aauaUUGGGgCCCCCaGUaa--GGGUUg -5'
5959 5' -53.4 NC_001806.1 + 107810 0.68 0.897796
Target:  5'- ----uGCCCCGGGGGaUCGgcuacaagcUCaCCGGCg -3'
miRNA:   3'- aauauUGGGGCCCCC-AGUa--------AG-GGUUG- -5'
5959 5' -53.4 NC_001806.1 + 6343 0.68 0.890988
Target:  5'- ----cACCCCGGGGGcC---UCCGACg -3'
miRNA:   3'- aauauUGGGGCCCCCaGuaaGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 146738 0.69 0.86139
Target:  5'- aUGUucCCCaCGGGGGUCAU-CCagaGGCu -3'
miRNA:   3'- aAUAuuGGG-GCCCCCAGUAaGGg--UUG- -5'
5959 5' -53.4 NC_001806.1 + 77149 0.7 0.819514
Target:  5'- ---gGAgCUCGGGGGgcgCGUggCCCAACa -3'
miRNA:   3'- aauaUUgGGGCCCCCa--GUAa-GGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 55525 0.7 0.801439
Target:  5'- ---gGGCCCgGGGGGUUuaGUggggcggCCCGACu -3'
miRNA:   3'- aauaUUGGGgCCCCCAG--UAa------GGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 49658 0.7 0.801439
Target:  5'- ---gAGCUCCGGGcGG-CAUUCCCGu- -3'
miRNA:   3'- aauaUUGGGGCCC-CCaGUAAGGGUug -5'
5959 5' -53.4 NC_001806.1 + 35097 0.7 0.801439
Target:  5'- -aAUGACCCCcGGGGUUAUaaaaggcgcgUCCCGu- -3'
miRNA:   3'- aaUAUUGGGGcCCCCAGUA----------AGGGUug -5'
5959 5' -53.4 NC_001806.1 + 11715 0.7 0.801439
Target:  5'- --uUGACCCCGGGaGGUUGUgguuuuggaucUCCCGu- -3'
miRNA:   3'- aauAUUGGGGCCC-CCAGUA-----------AGGGUug -5'
5959 5' -53.4 NC_001806.1 + 102102 0.71 0.782714
Target:  5'- ---cGGCUCCGGGGaUCAgcaugCCCAGCu -3'
miRNA:   3'- aauaUUGGGGCCCCcAGUaa---GGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 101113 0.71 0.773131
Target:  5'- ---cGGCCCgCGGGGGUCGUcgaCCaCGGCc -3'
miRNA:   3'- aauaUUGGG-GCCCCCAGUAa--GG-GUUG- -5'
5959 5' -53.4 NC_001806.1 + 92402 0.71 0.773131
Target:  5'- -cGUGACCCUGGGGu---UUCCCAAg -3'
miRNA:   3'- aaUAUUGGGGCCCCcaguAAGGGUUg -5'
5959 5' -53.4 NC_001806.1 + 26221 0.71 0.763414
Target:  5'- -----cCCCCGGGGGUCGcgCgCGGCc -3'
miRNA:   3'- aauauuGGGGCCCCCAGUaaGgGUUG- -5'
5959 5' -53.4 NC_001806.1 + 106689 0.71 0.753573
Target:  5'- -----cCCCCGGGGGcUC-UUCCCGGg -3'
miRNA:   3'- aauauuGGGGCCCCC-AGuAAGGGUUg -5'
5959 5' -53.4 NC_001806.1 + 21970 0.72 0.733561
Target:  5'- ---cAGCCCCGGcGGGUCGagCUgGACg -3'
miRNA:   3'- aauaUUGGGGCC-CCCAGUaaGGgUUG- -5'
5959 5' -53.4 NC_001806.1 + 143616 0.72 0.702866
Target:  5'- -----uCCCCGGGGGcCGUUaucUCCAGCg -3'
miRNA:   3'- aauauuGGGGCCCCCaGUAA---GGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 110324 0.74 0.587381
Target:  5'- ---cAACCCCGGGcGU-GUUCCCGACa -3'
miRNA:   3'- aauaUUGGGGCCCcCAgUAAGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 6072 0.75 0.556142
Target:  5'- ---cGGCCCCGGGGG-CGggCCCGGg -3'
miRNA:   3'- aauaUUGGGGCCCCCaGUaaGGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.