miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5960 3' -54.2 NC_001806.1 + 147684 0.66 0.962933
Target:  5'- cGGGGGccgGGGcgcgGGGGCGGGccccGGAGGc -3'
miRNA:   3'- -CCCCUa--CCU----UCCUGCCCuucaCCUUC- -5'
5960 3' -54.2 NC_001806.1 + 117069 0.66 0.962933
Target:  5'- gGGGGGUGG-GGGugGGcauccaGGGAGa -3'
miRNA:   3'- -CCCCUACCuUCCugCCcuuca-CCUUC- -5'
5960 3' -54.2 NC_001806.1 + 38812 0.66 0.962933
Target:  5'- cGGGGAccc--GGGCGGG-GGUGGAu- -3'
miRNA:   3'- -CCCCUaccuuCCUGCCCuUCACCUuc -5'
5960 3' -54.2 NC_001806.1 + 34084 0.66 0.962933
Target:  5'- uGGGGUGGggGuGuCGGuGGGUGGuuGu -3'
miRNA:   3'- cCCCUACCuuC-CuGCCcUUCACCuuC- -5'
5960 3' -54.2 NC_001806.1 + 36741 0.66 0.959413
Target:  5'- gGGGGAUGcGcccGGGCGGGAAGcuccuaaGGGc- -3'
miRNA:   3'- -CCCCUAC-Cuu-CCUGCCCUUCa------CCUuc -5'
5960 3' -54.2 NC_001806.1 + 83251 0.66 0.959413
Target:  5'- aGGGcccgcGGggGGGCGGGcgacGGAGGg -3'
miRNA:   3'- cCCCua---CCuuCCUGCCCuucaCCUUC- -5'
5960 3' -54.2 NC_001806.1 + 113272 0.66 0.955668
Target:  5'- uGGGGGUGGccgacguGGAgcugcCGGGggG-GGAc- -3'
miRNA:   3'- -CCCCUACCuu-----CCU-----GCCCuuCaCCUuc -5'
5960 3' -54.2 NC_001806.1 + 21197 0.66 0.955668
Target:  5'- cGGGGGgcccucgGGuGGGGCGcGGAgacGGaGGAGGg -3'
miRNA:   3'- -CCCCUa------CCuUCCUGC-CCU---UCaCCUUC- -5'
5960 3' -54.2 NC_001806.1 + 24987 0.66 0.953313
Target:  5'- gGGGGAcGGGgugcuguaacgggccGGGACGGGgcG-GGGc- -3'
miRNA:   3'- -CCCCUaCCU---------------UCCUGCCCuuCaCCUuc -5'
5960 3' -54.2 NC_001806.1 + 11749 0.66 0.953313
Target:  5'- uGGGGAaGGGcguggucgaugcuugGGGAgCGGGGauGGUGGucGAGg -3'
miRNA:   3'- -CCCCUaCCU---------------UCCU-GCCCU--UCACC--UUC- -5'
5960 3' -54.2 NC_001806.1 + 32578 0.66 0.952912
Target:  5'- aGGGGGcaguuggUGGucGGACGGGuaaguaAcagagucugacuaagGGUGGGAGg -3'
miRNA:   3'- -CCCCU-------ACCuuCCUGCCC------U---------------UCACCUUC- -5'
5960 3' -54.2 NC_001806.1 + 151288 0.66 0.951696
Target:  5'- cGGGGccGGggGG-CGGcGGcGGUGGGc- -3'
miRNA:   3'- -CCCCuaCCuuCCuGCC-CU-UCACCUuc -5'
5960 3' -54.2 NC_001806.1 + 27828 0.66 0.951696
Target:  5'- uGGGGGcgccggguUGGuccccGGGGACGGGGccgccccgcGGUGGGc- -3'
miRNA:   3'- -CCCCU--------ACC-----UUCCUGCCCU---------UCACCUuc -5'
5960 3' -54.2 NC_001806.1 + 9772 0.66 0.951696
Target:  5'- uGGGGGcgcgugGGGAGGggccccgacguGCGGGuGGGUGGGc- -3'
miRNA:   3'- -CCCCUa-----CCUUCC-----------UGCCC-UUCACCUuc -5'
5960 3' -54.2 NC_001806.1 + 99682 0.66 0.947493
Target:  5'- gGGGGAgUGGggGcAUGGGAcgccggacccuGG-GGAGGa -3'
miRNA:   3'- -CCCCU-ACCuuCcUGCCCU-----------UCaCCUUC- -5'
5960 3' -54.2 NC_001806.1 + 29006 0.66 0.947493
Target:  5'- aGGcGGAgaccgaagUGGggGGGCGGGggGa----- -3'
miRNA:   3'- -CC-CCU--------ACCuuCCUGCCCuuCaccuuc -5'
5960 3' -54.2 NC_001806.1 + 77281 0.67 0.943054
Target:  5'- cGGGGAccUGGccccAUGGGcGGUGGAGGa -3'
miRNA:   3'- -CCCCU--ACCuuccUGCCCuUCACCUUC- -5'
5960 3' -54.2 NC_001806.1 + 129709 0.67 0.943054
Target:  5'- cGGaGGcccGGggGGccacguucuuUGGGGAGUGGAAGc -3'
miRNA:   3'- -CC-CCua-CCuuCCu---------GCCCUUCACCUUC- -5'
5960 3' -54.2 NC_001806.1 + 120319 0.67 0.938378
Target:  5'- ----cUGGggGGACGGGGcGGUcGGggGc -3'
miRNA:   3'- ccccuACCuuCCUGCCCU-UCA-CCuuC- -5'
5960 3' -54.2 NC_001806.1 + 24879 0.67 0.933463
Target:  5'- cGGGGGccgUGGAGGuGCuGGggGcGGAGGc -3'
miRNA:   3'- -CCCCU---ACCUUCcUGcCCuuCaCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.