Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5960 | 5' | -59.6 | NC_001806.1 | + | 50423 | 0.67 | 0.663796 |
Target: 5'- -gCCUGCACCCgCaCgUGCa--CCACCCc -3' miRNA: 3'- uaGGAUGUGGG-G-GgACGgaaGGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 50812 | 0.72 | 0.397514 |
Target: 5'- -aCgUACACCCCCCUGCgCUacgcgugcguccUCCgagcgACCCa -3' miRNA: 3'- uaGgAUGUGGGGGGACG-GA------------AGG-----UGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 50923 | 0.66 | 0.761421 |
Target: 5'- -aUCUGCGCCCCgCCU-CCUcagCGCCCc -3' miRNA: 3'- uaGGAUGUGGGG-GGAcGGAag-GUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 52681 | 0.72 | 0.405922 |
Target: 5'- -gCCUACACUcgaCCCCcGCg-UCCACCCg -3' miRNA: 3'- uaGGAUGUGG---GGGGaCGgaAGGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 53244 | 0.67 | 0.691744 |
Target: 5'- -cCCUAUuuuCCCCCCcggGCCgcaccgggcccCCGCCCc -3' miRNA: 3'- uaGGAUGu--GGGGGGa--CGGaa---------GGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 57885 | 0.69 | 0.553693 |
Target: 5'- cAUCCU-CGCCCCCCgagcGCCc-CCGCUUg -3' miRNA: 3'- -UAGGAuGUGGGGGGa---CGGaaGGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 60019 | 0.67 | 0.703617 |
Target: 5'- gGUCCggaGCCgCgCUGCCgUCCGCCg -3' miRNA: 3'- -UAGGaugUGGgGgGACGGaAGGUGGg -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 60474 | 0.68 | 0.603475 |
Target: 5'- -aCC-AgGCCCCCuCUGCCgccggCCGCCg -3' miRNA: 3'- uaGGaUgUGGGGG-GACGGaa---GGUGGg -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 68756 | 0.67 | 0.673809 |
Target: 5'- -aCCUuacCACCCCggcguacagCCUGCuCUUCCccGCCCc -3' miRNA: 3'- uaGGAu--GUGGGG---------GGACG-GAAGG--UGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 72149 | 0.66 | 0.761421 |
Target: 5'- -cCCUGCG-CCCCCUGUCguacaCGCUCc -3' miRNA: 3'- uaGGAUGUgGGGGGACGGaag--GUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 72753 | 0.68 | 0.593451 |
Target: 5'- cUCCgccgaccCACCCUCC-GCCgacCCACCCu -3' miRNA: 3'- uAGGau-----GUGGGGGGaCGGaa-GGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 72998 | 0.69 | 0.544849 |
Target: 5'- cUCg-GC-CCCCCCUGCCaaaaccaagaagaaaUCCACCCc -3' miRNA: 3'- uAGgaUGuGGGGGGACGGa--------------AGGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 73088 | 0.76 | 0.230528 |
Target: 5'- uGUCCUcgccucgGCACCCCCCgacccgGCCgggCCGCCg -3' miRNA: 3'- -UAGGA-------UGUGGGGGGa-----CGGaa-GGUGGg -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 73472 | 0.66 | 0.752013 |
Target: 5'- -cCCggcCGCCgCCCUGCUggagUUUACCCu -3' miRNA: 3'- uaGGau-GUGGgGGGACGGa---AGGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 74821 | 0.69 | 0.551724 |
Target: 5'- gGUCCUGCGCCCCCucccugaCUuugugggcuaaagGCCUgUCCGgCCg -3' miRNA: 3'- -UAGGAUGUGGGGG-------GA-------------CGGA-AGGUgGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 74879 | 0.66 | 0.713448 |
Target: 5'- -cCCUGCggGCCUCCCUGCCggCgGgCUg -3' miRNA: 3'- uaGGAUG--UGGGGGGACGGaaGgUgGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 75285 | 0.67 | 0.683789 |
Target: 5'- -cCCgGCcuCCCCCCUgGCCUUCCuagcgGCCa -3' miRNA: 3'- uaGGaUGu-GGGGGGA-CGGAAGG-----UGGg -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 75914 | 0.66 | 0.732899 |
Target: 5'- -cCCaUACACCCCCgaGaaCCagcgCCACCCc -3' miRNA: 3'- uaGG-AUGUGGGGGgaC--GGaa--GGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 79406 | 0.68 | 0.623577 |
Target: 5'- -cCCcGCGCCCCuCCuUGCCccggacccccUUUCGCCCa -3' miRNA: 3'- uaGGaUGUGGGG-GG-ACGG----------AAGGUGGG- -5' |
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5960 | 5' | -59.6 | NC_001806.1 | + | 79601 | 0.76 | 0.225608 |
Target: 5'- uUCCccgGCGCCCCCCgaUGCCa-CCGCCCc -3' miRNA: 3'- uAGGa--UGUGGGGGG--ACGGaaGGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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