miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5960 5' -59.6 NC_001806.1 + 143644 0.67 0.69769
Target:  5'- cGUCCggcgcgcCGCCCCCC-GCCgcuaaaccccaucCCGCCCc -3'
miRNA:   3'- -UAGGau-----GUGGGGGGaCGGaa-----------GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 148937 0.67 0.693728
Target:  5'- cGUCCcccCGCCCCCCcacuucgGUCU-CCGCCUc -3'
miRNA:   3'- -UAGGau-GUGGGGGGa------CGGAaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 144306 0.67 0.693728
Target:  5'- -cCCgcgACACCCCCC--CC--CCGCCCg -3'
miRNA:   3'- uaGGa--UGUGGGGGGacGGaaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 53244 0.67 0.691744
Target:  5'- -cCCUAUuuuCCCCCCcggGCCgcaccgggcccCCGCCCc -3'
miRNA:   3'- uaGGAUGu--GGGGGGa--CGGaa---------GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 17139 0.67 0.683789
Target:  5'- cUCCcccggACGCCUCCgCUGCCggUCGCuCCa -3'
miRNA:   3'- uAGGa----UGUGGGGG-GACGGaaGGUG-GG- -5'
5960 5' -59.6 NC_001806.1 + 151125 0.67 0.683789
Target:  5'- cUCCgGCGCCCCCU--CC--CCGCCCg -3'
miRNA:   3'- uAGGaUGUGGGGGGacGGaaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 75285 0.67 0.683789
Target:  5'- -cCCgGCcuCCCCCCUgGCCUUCCuagcgGCCa -3'
miRNA:   3'- uaGGaUGu-GGGGGGA-CGGAAGG-----UGGg -5'
5960 5' -59.6 NC_001806.1 + 23197 0.67 0.679802
Target:  5'- -gCCUGCGCCCCCUgcuggcggcggcgGCCagCgCACCg -3'
miRNA:   3'- uaGGAUGUGGGGGGa------------CGGaaG-GUGGg -5'
5960 5' -59.6 NC_001806.1 + 126310 0.67 0.673809
Target:  5'- aGUCCccaAgACCCCCCUgGCCUUUUACg- -3'
miRNA:   3'- -UAGGa--UgUGGGGGGA-CGGAAGGUGgg -5'
5960 5' -59.6 NC_001806.1 + 17661 0.67 0.673809
Target:  5'- -aCCca-GCCCCCCUcGCC-UCUACCa -3'
miRNA:   3'- uaGGaugUGGGGGGA-CGGaAGGUGGg -5'
5960 5' -59.6 NC_001806.1 + 68756 0.67 0.673809
Target:  5'- -aCCUuacCACCCCggcguacagCCUGCuCUUCCccGCCCc -3'
miRNA:   3'- uaGGAu--GUGGGG---------GGACG-GAAGG--UGGG- -5'
5960 5' -59.6 NC_001806.1 + 50423 0.67 0.663796
Target:  5'- -gCCUGCACCCgCaCgUGCa--CCACCCc -3'
miRNA:   3'- uaGGAUGUGGG-G-GgACGgaaGGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 115621 0.67 0.663796
Target:  5'- -aCCUGCGCCagcgaCCCcGCCcUCCuccgcaguGCCCg -3'
miRNA:   3'- uaGGAUGUGGg----GGGaCGGaAGG--------UGGG- -5'
5960 5' -59.6 NC_001806.1 + 136824 0.67 0.663796
Target:  5'- cGUUgUACACCCCCUgGCCcUCgguaUACCCc -3'
miRNA:   3'- -UAGgAUGUGGGGGGaCGGaAG----GUGGG- -5'
5960 5' -59.6 NC_001806.1 + 149126 0.67 0.663796
Target:  5'- aGUCCU--GCCCCCCUGCUg---GCCUc -3'
miRNA:   3'- -UAGGAugUGGGGGGACGGaaggUGGG- -5'
5960 5' -59.6 NC_001806.1 + 109381 0.67 0.653759
Target:  5'- -gCCcGCGCCCCCCgaccccGCCccCgACCCg -3'
miRNA:   3'- uaGGaUGUGGGGGGa-----CGGaaGgUGGG- -5'
5960 5' -59.6 NC_001806.1 + 79793 0.67 0.653759
Target:  5'- uUUCgcGCGCCCCCCgGCCccUCCcaaACCCc -3'
miRNA:   3'- uAGGa-UGUGGGGGGaCGGa-AGG---UGGG- -5'
5960 5' -59.6 NC_001806.1 + 16967 0.68 0.643704
Target:  5'- cUCCUcCuuCCUCCUGCCcugUCC-CCCg -3'
miRNA:   3'- uAGGAuGugGGGGGACGGa--AGGuGGG- -5'
5960 5' -59.6 NC_001806.1 + 9632 0.68 0.643704
Target:  5'- -cCCU-UACCCgaggCCCUGCUUUuaaCCGCCCg -3'
miRNA:   3'- uaGGAuGUGGG----GGGACGGAA---GGUGGG- -5'
5960 5' -59.6 NC_001806.1 + 32536 0.68 0.643704
Target:  5'- -aCCgGCcgACCCCCUggcgGUCUUCCAgCCg -3'
miRNA:   3'- uaGGaUG--UGGGGGGa---CGGAAGGUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.