Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5964 | 3' | -65.2 | NC_001806.1 | + | 150879 | 0.66 | 0.455265 |
Target: 5'- -gCGGGCcagGGCCCGGGCaCG-GGcCUCg- -3' miRNA: 3'- caGUCCG---UCGGGCCCG-GCgCC-GAGac -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 148100 | 0.67 | 0.43793 |
Target: 5'- --gGGGCGcuGUCCGaGCCGCGGCcggCUGg -3' miRNA: 3'- cagUCCGU--CGGGCcCGGCGCCGa--GAC- -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 147984 | 0.66 | 0.455265 |
Target: 5'- --gGGGCcagacGCCCcccgcGGcGCCGCGGCUCg- -3' miRNA: 3'- cagUCCGu----CGGG-----CC-CGGCGCCGAGac -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 146184 | 1.06 | 0.000606 |
Target: 5'- gGUCAGGCAGCCCGGGCCGCGGCUCUGu -3' miRNA: 3'- -CAGUCCGUCGGGCCCGGCGCCGAGAC- -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 144574 | 0.76 | 0.100442 |
Target: 5'- -cCGGGCGcGUCCGGguGCCGCGGCUCUc -3' miRNA: 3'- caGUCCGU-CGGGCC--CGGCGCCGAGAc -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 143404 | 0.75 | 0.116686 |
Target: 5'- ---cGGCGG-CCGGGUCGCGGCUCUu -3' miRNA: 3'- caguCCGUCgGGCCCGGCGCCGAGAc -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 136534 | 0.69 | 0.29418 |
Target: 5'- -aCGGGCcGCUCGGGCCGCccGGCg--- -3' miRNA: 3'- caGUCCGuCGGGCCCGGCG--CCGagac -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 131965 | 0.69 | 0.333118 |
Target: 5'- cGUCcuGGCGGCCCuggagcgccagaccGGGCCGgUGGCcCUGu -3' miRNA: 3'- -CAGu-CCGUCGGG--------------CCCGGC-GCCGaGAC- -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 115114 | 0.69 | 0.314217 |
Target: 5'- uUCGGGUGcGCCCaGGuGCCGCGGCg--- -3' miRNA: 3'- cAGUCCGU-CGGG-CC-CGGCGCCGagac -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 108152 | 0.66 | 0.46407 |
Target: 5'- -aCAcGCAGCCCGuGGCCGCaauugcgcccgGGuUUCUGg -3' miRNA: 3'- caGUcCGUCGGGC-CCGGCG-----------CC-GAGAC- -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 107028 | 0.67 | 0.43793 |
Target: 5'- -cCGGGUuggccGCCCgcgGGGCCGCgGGCUgUGc -3' miRNA: 3'- caGUCCGu----CGGG---CCCGGCG-CCGAgAC- -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 94195 | 0.66 | 0.472963 |
Target: 5'- -cCGGGCcuggaGGCCCaGGCCGgGGC-CUu -3' miRNA: 3'- caGUCCG-----UCGGGcCCGGCgCCGaGAc -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 89507 | 0.71 | 0.229239 |
Target: 5'- uGUCuGGCGGaUCCGGGCgGCGaGCUgCUGc -3' miRNA: 3'- -CAGuCCGUC-GGGCCCGgCGC-CGA-GAC- -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 86661 | 0.71 | 0.251334 |
Target: 5'- cGUCAgcccGGCGGCCgUGaGGCCGCGGCa--- -3' miRNA: 3'- -CAGU----CCGUCGG-GC-CCGGCGCCGagac -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 77963 | 0.72 | 0.199194 |
Target: 5'- ---cGGCGGCCCcgGGGCCGCcGCUCg- -3' miRNA: 3'- caguCCGUCGGG--CCCGGCGcCGAGac -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 76589 | 0.67 | 0.412655 |
Target: 5'- -cCGGGCccAGCUCGaGGCCGaGGgUCUGg -3' miRNA: 3'- caGUCCG--UCGGGC-CCGGCgCCgAGAC- -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 75983 | 0.68 | 0.349866 |
Target: 5'- --gAGcGCGGCCUucgGGGCCGCGGC-Cg- -3' miRNA: 3'- cagUC-CGUCGGG---CCCGGCGCCGaGac -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 72692 | 0.67 | 0.388301 |
Target: 5'- aUCGGGC-GCCCgacgauguauGGGCgGUGGCcCUGa -3' miRNA: 3'- cAGUCCGuCGGG----------CCCGgCGCCGaGAC- -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 72371 | 0.72 | 0.197318 |
Target: 5'- cGUCGGGCccggaacccgcGGCUCcugcggacuugacGGCCGCGGCUCUGc -3' miRNA: 3'- -CAGUCCG-----------UCGGGc------------CCGGCGCCGAGAC- -5' |
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5964 | 3' | -65.2 | NC_001806.1 | + | 69860 | 0.67 | 0.390693 |
Target: 5'- cUCGGGCAGCCCagccacgcccccucuGuccaccuGGCCGCGGCg--- -3' miRNA: 3'- cAGUCCGUCGGG---------------C-------CCGGCGCCGagac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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