Results 41 - 60 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5964 | 5' | -58.2 | NC_001806.1 | + | 23831 | 0.67 | 0.770469 |
Target: 5'- cGCCucGGGCCcgcUGCgCC-GCAUGGCGgCCu -3' miRNA: 3'- -UGGu-CUCGG---ACG-GGuUGUACCGUgGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 73457 | 0.67 | 0.770469 |
Target: 5'- gGCCGGgguGGCCgGCCCGGCcgc-CGCCCu -3' miRNA: 3'- -UGGUC---UCGGaCGGGUUGuaccGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 6046 | 0.67 | 0.770469 |
Target: 5'- cACUGGcGCCgUGCCCGACuccGCGCCg -3' miRNA: 3'- -UGGUCuCGG-ACGGGUUGuacCGUGGg -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 88996 | 0.67 | 0.767658 |
Target: 5'- gGCCAGaAGCC-GCCCGacccgacgcggaggACGUcGCGCUCg -3' miRNA: 3'- -UGGUC-UCGGaCGGGU--------------UGUAcCGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 117690 | 0.67 | 0.761057 |
Target: 5'- aGCuCGGGGCCcgaGCCCG-CGUcGGCcCCCu -3' miRNA: 3'- -UG-GUCUCGGa--CGGGUuGUA-CCGuGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 98146 | 0.67 | 0.761057 |
Target: 5'- cCCGGGGCCUGCUaCAGCc--GCcCCCu -3' miRNA: 3'- uGGUCUCGGACGG-GUUGuacCGuGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 34409 | 0.67 | 0.761057 |
Target: 5'- gGCCGG-GCCggGCCgGGCcgGGCcggGCCg -3' miRNA: 3'- -UGGUCuCGGa-CGGgUUGuaCCG---UGGg -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 92506 | 0.67 | 0.760109 |
Target: 5'- uCCAGAgcGCCUaccagaaGCCCGACAagcgcgUGGaCAUCCu -3' miRNA: 3'- uGGUCU--CGGA-------CGGGUUGU------ACC-GUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 1737 | 0.68 | 0.702523 |
Target: 5'- cGCCGGcAGCacgGCCCGGC--GGUACUCg -3' miRNA: 3'- -UGGUC-UCGga-CGGGUUGuaCCGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 79823 | 0.68 | 0.702523 |
Target: 5'- cCCAGAGCCagcGcCCCAGCuuUGGUgucugguguGCCCc -3' miRNA: 3'- uGGUCUCGGa--C-GGGUUGu-ACCG---------UGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 130635 | 0.68 | 0.702523 |
Target: 5'- uGCUGGAgGCCUGUCUccgcguuccCAUGGCcACCCg -3' miRNA: 3'- -UGGUCU-CGGACGGGuu-------GUACCG-UGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 120812 | 0.68 | 0.701524 |
Target: 5'- cGCCucuGGGGUUUGCCCuccccccgcccccGGCAUGGCGCa- -3' miRNA: 3'- -UGG---UCUCGGACGGG-------------UUGUACCGUGgg -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 106363 | 0.68 | 0.692509 |
Target: 5'- cGCCGGuugggGCCCGGC--GGCACCCg -3' miRNA: 3'- -UGGUCucggaCGGGUUGuaCCGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 27090 | 0.68 | 0.702523 |
Target: 5'- gGCCcgcGGAGCCgGCCCGGCGaacucGGUcuaacguuacACCCg -3' miRNA: 3'- -UGG---UCUCGGaCGGGUUGUa----CCG----------UGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 72514 | 0.68 | 0.702523 |
Target: 5'- gGCCugggGGAGcCCUGCgUCGGCGUGG-GCCCc -3' miRNA: 3'- -UGG----UCUC-GGACG-GGUUGUACCgUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 52083 | 0.68 | 0.703521 |
Target: 5'- gACCGGGGUCccagcggcacgaccgGCuCCAugcaguGCAUGGCGCUCa -3' miRNA: 3'- -UGGUCUCGGa--------------CG-GGU------UGUACCGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 112374 | 0.68 | 0.712478 |
Target: 5'- cACCAcGGCCacgcaGCCCucCGUGGCcguGCCCc -3' miRNA: 3'- -UGGUcUCGGa----CGGGuuGUACCG---UGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 119922 | 0.68 | 0.712478 |
Target: 5'- gACCGaGGCCUGCgCCGcagaacGCGUcGuGCGCCCc -3' miRNA: 3'- -UGGUcUCGGACG-GGU------UGUA-C-CGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 127059 | 0.68 | 0.712478 |
Target: 5'- uCCGGGGCCcgGCCCuGCu--GCugCCg -3' miRNA: 3'- uGGUCUCGGa-CGGGuUGuacCGugGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 2759 | 0.68 | 0.692509 |
Target: 5'- gGCCAcggggcgcgggcGGGCCUGCgCCGcgGCGgcccggGGCGCCg -3' miRNA: 3'- -UGGU------------CUCGGACG-GGU--UGUa-----CCGUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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