miRNA display CGI


Results 81 - 100 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5964 5' -58.2 NC_001806.1 + 125843 0.69 0.610302
Target:  5'- cGCCGcGGGCC--CCCGGCcgccgcggacgccGUGGCGCCCc -3'
miRNA:   3'- -UGGU-CUCGGacGGGUUG-------------UACCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 57045 0.69 0.601158
Target:  5'- cCCGGGGCCgggGCCCccggcugcguGCcgGGCucCCCg -3'
miRNA:   3'- uGGUCUCGGa--CGGGu---------UGuaCCGu-GGG- -5'
5964 5' -58.2 NC_001806.1 + 101851 0.69 0.601158
Target:  5'- cACCAGcGCC-GCCUGGCG-GGCcCCCg -3'
miRNA:   3'- -UGGUCuCGGaCGGGUUGUaCCGuGGG- -5'
5964 5' -58.2 NC_001806.1 + 151002 0.69 0.630661
Target:  5'- cGCCAGgcgggcGGCCgagGCCCAgaccaccAgGUGGCgcACCCg -3'
miRNA:   3'- -UGGUC------UCGGa--CGGGU-------UgUACCG--UGGG- -5'
5964 5' -58.2 NC_001806.1 + 109047 0.69 0.63168
Target:  5'- --gGGGGCUcagGCCCAACGcGGC-CCCg -3'
miRNA:   3'- uggUCUCGGa--CGGGUUGUaCCGuGGG- -5'
5964 5' -58.2 NC_001806.1 + 3460 0.69 0.63168
Target:  5'- gGCCAcgcGGCCgGCCUgGGCGcGGCGCCCg -3'
miRNA:   3'- -UGGUc--UCGGaCGGG-UUGUaCCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 22321 0.69 0.652041
Target:  5'- gACCAG-GCCUGCuuCCGGaucUcgGGCGCCg -3'
miRNA:   3'- -UGGUCuCGGACG--GGUU---GuaCCGUGGg -5'
5964 5' -58.2 NC_001806.1 + 31245 0.69 0.652041
Target:  5'- gACCAGGGCa--CCCuagugGGCGCCCu -3'
miRNA:   3'- -UGGUCUCGgacGGGuuguaCCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 149560 0.69 0.652041
Target:  5'- gUCAGGGgguuCCgcacccCCUAACAUGGCGCCCc -3'
miRNA:   3'- uGGUCUC----GGac----GGGUUGUACCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 96513 0.69 0.641865
Target:  5'- aACgGGGGcCCUGCcacuCCGGCGccgcccgccccUGGCGCCCc -3'
miRNA:   3'- -UGgUCUC-GGACG----GGUUGU-----------ACCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 149748 0.69 0.641865
Target:  5'- --uGGcGCCc-CCCAAUAUGGCGCCCc -3'
miRNA:   3'- uggUCuCGGacGGGUUGUACCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 78242 0.69 0.638809
Target:  5'- cCCGGGGCCucaUGUUCGGCAcgcggcuggcagacUGGCGCCg -3'
miRNA:   3'- uGGUCUCGG---ACGGGUUGU--------------ACCGUGGg -5'
5964 5' -58.2 NC_001806.1 + 32964 0.69 0.63168
Target:  5'- gGCCGGGGCCccuuggGUCCGcCggGGC-CCCg -3'
miRNA:   3'- -UGGUCUCGGa-----CGGGUuGuaCCGuGGG- -5'
5964 5' -58.2 NC_001806.1 + 75567 0.69 0.63168
Target:  5'- gGCCGGGGaCCacuccCCCAGCggGcGCGCCCu -3'
miRNA:   3'- -UGGUCUC-GGac---GGGUUGuaC-CGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 31765 0.69 0.63168
Target:  5'- -aCAGAGCCgcgGCCCg----GGCugCCu -3'
miRNA:   3'- ugGUCUCGGa--CGGGuuguaCCGugGG- -5'
5964 5' -58.2 NC_001806.1 + 22159 0.69 0.63168
Target:  5'- cGCCGGuucgaGGCCUcgggcGcCCCGGCGgccgugugGGCGCCCg -3'
miRNA:   3'- -UGGUC-----UCGGA-----C-GGGUUGUa-------CCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 80301 0.7 0.560811
Target:  5'- aGCCGGuGGCCacGCCCAccACAucUGcGCGCCCc -3'
miRNA:   3'- -UGGUC-UCGGa-CGGGU--UGU--AC-CGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 46109 0.7 0.57084
Target:  5'- cCCGGGGCCUGCgCg----GGCGCCUc -3'
miRNA:   3'- uGGUCUCGGACGgGuuguaCCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 47259 0.7 0.580912
Target:  5'- cGCCuGAGCCagGCCCAGCucAUGcccucccCACCCa -3'
miRNA:   3'- -UGGuCUCGGa-CGGGUUG--UACc------GUGGG- -5'
5964 5' -58.2 NC_001806.1 + 23105 0.7 0.560811
Target:  5'- cGCCGGGGCCcuggGCCCcGCGcugccgcGGgACCCg -3'
miRNA:   3'- -UGGUCUCGGa---CGGGuUGUa------CCgUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.