miRNA display CGI


Results 81 - 100 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5964 5' -58.2 NC_001806.1 + 61439 0.68 0.67234
Target:  5'- cGCCAGcGCCgccggGCUCAggAUAUGGCugUCc -3'
miRNA:   3'- -UGGUCuCGGa----CGGGU--UGUACCGugGG- -5'
5964 5' -58.2 NC_001806.1 + 45931 0.68 0.67234
Target:  5'- cGCCuGAcaCCU-CCCGcCGUGGCGCCCu -3'
miRNA:   3'- -UGGuCUc-GGAcGGGUuGUACCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 77151 0.68 0.67234
Target:  5'- aGCUcggGGGGCgCgugGCCCAACAcgccgaccUGaGCGCCCg -3'
miRNA:   3'- -UGG---UCUCG-Ga--CGGGUUGU--------AC-CGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 132357 0.68 0.67234
Target:  5'- ---uGGGCCUGCggCCAcGCG-GGCACCCg -3'
miRNA:   3'- ugguCUCGGACG--GGU-UGUaCCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 143541 0.68 0.671328
Target:  5'- cCCGGcccGGCCcgGCCCGGCccGGCcaccgccGCCCa -3'
miRNA:   3'- uGGUC---UCGGa-CGGGUUGuaCCG-------UGGG- -5'
5964 5' -58.2 NC_001806.1 + 128034 0.68 0.662203
Target:  5'- gGCCAG-GCCgacgaUGCCCGugGcGGCcacgGCCCc -3'
miRNA:   3'- -UGGUCuCGG-----ACGGGUugUaCCG----UGGG- -5'
5964 5' -58.2 NC_001806.1 + 74849 0.68 0.662203
Target:  5'- gGCUAaaGGCCUGUCCGGCcguccUGGCgACCCu -3'
miRNA:   3'- -UGGUc-UCGGACGGGUUGu----ACCG-UGGG- -5'
5964 5' -58.2 NC_001806.1 + 6046 0.67 0.770469
Target:  5'- cACUGGcGCCgUGCCCGACuccGCGCCg -3'
miRNA:   3'- -UGGUCuCGG-ACGGGUUGuacCGUGGg -5'
5964 5' -58.2 NC_001806.1 + 73457 0.67 0.770469
Target:  5'- gGCCGGgguGGCCgGCCCGGCcgc-CGCCCu -3'
miRNA:   3'- -UGGUC---UCGGaCGGGUUGuaccGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 23831 0.67 0.770469
Target:  5'- cGCCucGGGCCcgcUGCgCC-GCAUGGCGgCCu -3'
miRNA:   3'- -UGGu-CUCGG---ACG-GGuUGUACCGUgGG- -5'
5964 5' -58.2 NC_001806.1 + 93004 0.67 0.770469
Target:  5'- cGCCAGcugcaaccuGCUgcgGCCCGuCAUGGCggcgcGCCCc -3'
miRNA:   3'- -UGGUCu--------CGGa--CGGGUuGUACCG-----UGGG- -5'
5964 5' -58.2 NC_001806.1 + 139429 0.67 0.770469
Target:  5'- cCCAGGGCCUuaGCCUgGACAaGGuCGCCa -3'
miRNA:   3'- uGGUCUCGGA--CGGG-UUGUaCC-GUGGg -5'
5964 5' -58.2 NC_001806.1 + 88996 0.67 0.767658
Target:  5'- gGCCAGaAGCC-GCCCGacccgacgcggaggACGUcGCGCUCg -3'
miRNA:   3'- -UGGUC-UCGGaCGGGU--------------UGUAcCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 117690 0.67 0.761057
Target:  5'- aGCuCGGGGCCcgaGCCCG-CGUcGGCcCCCu -3'
miRNA:   3'- -UG-GUCUCGGa--CGGGUuGUA-CCGuGGG- -5'
5964 5' -58.2 NC_001806.1 + 42914 0.67 0.741901
Target:  5'- cCCAuuuAGCCcGCCCGACGcuUGGUagagcGCCCg -3'
miRNA:   3'- uGGUc--UCGGaCGGGUUGU--ACCG-----UGGG- -5'
5964 5' -58.2 NC_001806.1 + 30261 0.67 0.741901
Target:  5'- uCCGGGGCCcgGCCCccGCGccccGGCcCCCg -3'
miRNA:   3'- uGGUCUCGGa-CGGGu-UGUa---CCGuGGG- -5'
5964 5' -58.2 NC_001806.1 + 150882 0.67 0.732176
Target:  5'- gGCCAGGGCCcggGCaCgGGCcucgGGC-CCCa -3'
miRNA:   3'- -UGGUCUCGGa--CG-GgUUGua--CCGuGGG- -5'
5964 5' -58.2 NC_001806.1 + 96375 0.67 0.732176
Target:  5'- cGCCAGGGC--GCCCccgcGCGggGGCGCCg -3'
miRNA:   3'- -UGGUCUCGgaCGGGu---UGUa-CCGUGGg -5'
5964 5' -58.2 NC_001806.1 + 4329 0.67 0.732176
Target:  5'- gGCCAccGCCgcgcggGCCCGGC--GGCGCUCg -3'
miRNA:   3'- -UGGUcuCGGa-----CGGGUUGuaCCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 35596 0.67 0.722365
Target:  5'- cGCCGGAGUUuugGCCCuGGCGgguuauUGGCAaCCCc -3'
miRNA:   3'- -UGGUCUCGGa--CGGG-UUGU------ACCGU-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.