miRNA display CGI


Results 121 - 135 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5964 5' -58.2 NC_001806.1 + 95421 0.66 0.815525
Target:  5'- gACCGucGCCgcggGCCCGggggGCA-GGgGCCCg -3'
miRNA:   3'- -UGGUcuCGGa---CGGGU----UGUaCCgUGGG- -5'
5964 5' -58.2 NC_001806.1 + 145010 0.66 0.815525
Target:  5'- cCCGGGGCCccacaacgGCCCGgcGCAUGcGCugUg -3'
miRNA:   3'- uGGUCUCGGa-------CGGGU--UGUAC-CGugGg -5'
5964 5' -58.2 NC_001806.1 + 78686 0.66 0.788919
Target:  5'- uCCuGGGCgC-GCCCGucguCGUGGCGCuCCg -3'
miRNA:   3'- uGGuCUCG-GaCGGGUu---GUACCGUG-GG- -5'
5964 5' -58.2 NC_001806.1 + 43500 0.66 0.788919
Target:  5'- -aCGGGGCCguggcgGCCCAucaggACAagaugcGGCGCCUg -3'
miRNA:   3'- ugGUCUCGGa-----CGGGU-----UGUa-----CCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 71336 0.66 0.778836
Target:  5'- aGCCGGAgGCCUaugggcacgGCCCAcgccaggcggaccGCGagggGGCGCCUc -3'
miRNA:   3'- -UGGUCU-CGGA---------CGGGU-------------UGUa---CCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 26622 0.66 0.77976
Target:  5'- gGCCGGAcaGCCccccGCCCGAgccGGCGCCa -3'
miRNA:   3'- -UGGUCU--CGGa---CGGGUUguaCCGUGGg -5'
5964 5' -58.2 NC_001806.1 + 64901 0.66 0.77976
Target:  5'- gACCAGcGCCgGCCUcuGGCGUcGGCGCg- -3'
miRNA:   3'- -UGGUCuCGGaCGGG--UUGUA-CCGUGgg -5'
5964 5' -58.2 NC_001806.1 + 132509 0.66 0.786186
Target:  5'- cCCGGGGCCcuggcccccgucuuUGCCUuuC-UGGgGCCCg -3'
miRNA:   3'- uGGUCUCGG--------------ACGGGuuGuACCgUGGG- -5'
5964 5' -58.2 NC_001806.1 + 98879 0.66 0.786186
Target:  5'- gGCCAagcuAGCCgagGCCCGggagaugauacgguACAUGGC-CCUg -3'
miRNA:   3'- -UGGUc---UCGGa--CGGGU--------------UGUACCGuGGG- -5'
5964 5' -58.2 NC_001806.1 + 58695 0.66 0.788009
Target:  5'- -aCGGGGCCUgGCCCGugAUcGCcaacuccACCCg -3'
miRNA:   3'- ugGUCUCGGA-CGGGUugUAcCG-------UGGG- -5'
5964 5' -58.2 NC_001806.1 + 94212 0.66 0.788919
Target:  5'- gGCCGGGGCCUuucucaCCCcGCugucGGuCACCCu -3'
miRNA:   3'- -UGGUCUCGGAc-----GGGuUGua--CC-GUGGG- -5'
5964 5' -58.2 NC_001806.1 + 1414 0.66 0.788919
Target:  5'- cCCGuGGCCgagGCCCAGCGaaucccgggcGGCGCCg -3'
miRNA:   3'- uGGUcUCGGa--CGGGUUGUa---------CCGUGGg -5'
5964 5' -58.2 NC_001806.1 + 4746 0.66 0.788919
Target:  5'- gGCCGGGGCCcggucGCCggCGGCGUcGGCugCg -3'
miRNA:   3'- -UGGUCUCGGa----CGG--GUUGUA-CCGugGg -5'
5964 5' -58.2 NC_001806.1 + 27329 0.66 0.788919
Target:  5'- uUCGGGGCCcgGCCCAuug-GGCgggaguuaccGCCCa -3'
miRNA:   3'- uGGUCUCGGa-CGGGUuguaCCG----------UGGG- -5'
5964 5' -58.2 NC_001806.1 + 151285 0.65 0.821527
Target:  5'- gGCCGGGGCCgggggGCggCGGCGgugggccgggccucUGGCGCCg -3'
miRNA:   3'- -UGGUCUCGGa----CGg-GUUGU--------------ACCGUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.