Results 61 - 80 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5964 | 5' | -58.2 | NC_001806.1 | + | 67402 | 0.67 | 0.742868 |
Target: 5'- uCCAGGGCCUGUUCggUAUcgucguugggggucaGCGCCCc -3' miRNA: 3'- uGGUCUCGGACGGGuuGUAc--------------CGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 67834 | 0.68 | 0.712478 |
Target: 5'- gGCCAuuuGGGCC-GCCCcGCAgaaaguccGCACCCa -3' miRNA: 3'- -UGGU---CUCGGaCGGGuUGUac------CGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 70918 | 0.71 | 0.482808 |
Target: 5'- --aAGGGCCUGCagacggagcgcgCCGugguCGUGGCGCCCu -3' miRNA: 3'- uggUCUCGGACG------------GGUu---GUACCGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 71336 | 0.66 | 0.778836 |
Target: 5'- aGCCGGAgGCCUaugggcacgGCCCAcgccaggcggaccGCGagggGGCGCCUc -3' miRNA: 3'- -UGGUCU-CGGA---------CGGGU-------------UGUa---CCGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 72514 | 0.68 | 0.702523 |
Target: 5'- gGCCugggGGAGcCCUGCgUCGGCGUGG-GCCCc -3' miRNA: 3'- -UGG----UCUC-GGACG-GGUUGUACCgUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 72671 | 0.78 | 0.205654 |
Target: 5'- aACCAGAgGCCaagcGCCCgAAUcgGGCGCCCg -3' miRNA: 3'- -UGGUCU-CGGa---CGGG-UUGuaCCGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 73079 | 0.8 | 0.152233 |
Target: 5'- uCCGGAGCCUGUCCucGCcucGGCACCCc -3' miRNA: 3'- uGGUCUCGGACGGGu-UGua-CCGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 73457 | 0.67 | 0.770469 |
Target: 5'- gGCCGGgguGGCCgGCCCGGCcgc-CGCCCu -3' miRNA: 3'- -UGGUC---UCGGaCGGGUUGuaccGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 73551 | 0.88 | 0.042779 |
Target: 5'- cGCCuGAGCCUGgCCGACGUGGCcGCCCa -3' miRNA: 3'- -UGGuCUCGGACgGGUUGUACCG-UGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 73993 | 0.72 | 0.464108 |
Target: 5'- gGCCGGGGCg-GCCCcGCAgggGGCuccgcGCCCa -3' miRNA: 3'- -UGGUCUCGgaCGGGuUGUa--CCG-----UGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 74849 | 0.68 | 0.662203 |
Target: 5'- gGCUAaaGGCCUGUCCGGCcguccUGGCgACCCu -3' miRNA: 3'- -UGGUc-UCGGACGGGUUGu----ACCG-UGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 75567 | 0.69 | 0.63168 |
Target: 5'- gGCCGGGGaCCacuccCCCAGCggGcGCGCCCu -3' miRNA: 3'- -UGGUCUC-GGac---GGGUUGuaC-CGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 76334 | 0.7 | 0.540905 |
Target: 5'- gGCCGccGAGCUUGUCCgGGCAggGGuCACCCu -3' miRNA: 3'- -UGGU--CUCGGACGGG-UUGUa-CC-GUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 77151 | 0.68 | 0.67234 |
Target: 5'- aGCUcggGGGGCgCgugGCCCAACAcgccgaccUGaGCGCCCg -3' miRNA: 3'- -UGG---UCUCG-Ga--CGGGUUGU--------AC-CGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 78242 | 0.69 | 0.638809 |
Target: 5'- cCCGGGGCCucaUGUUCGGCAcgcggcuggcagacUGGCGCCg -3' miRNA: 3'- uGGUCUCGG---ACGGGUUGU--------------ACCGUGGg -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 78686 | 0.66 | 0.788919 |
Target: 5'- uCCuGGGCgC-GCCCGucguCGUGGCGCuCCg -3' miRNA: 3'- uGGuCUCG-GaCGGGUu---GUACCGUG-GG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 79741 | 0.69 | 0.611319 |
Target: 5'- cCCAGGguuggcggccGCCUGCCCuccccGACAcGGuCGCCCc -3' miRNA: 3'- uGGUCU----------CGGACGGG-----UUGUaCC-GUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 79823 | 0.68 | 0.702523 |
Target: 5'- cCCAGAGCCagcGcCCCAGCuuUGGUgucugguguGCCCc -3' miRNA: 3'- uGGUCUCGGa--C-GGGUUGu-ACCG---------UGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 80301 | 0.7 | 0.560811 |
Target: 5'- aGCCGGuGGCCacGCCCAccACAucUGcGCGCCCc -3' miRNA: 3'- -UGGUC-UCGGa-CGGGU--UGU--AC-CGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 81361 | 0.69 | 0.621496 |
Target: 5'- gGCCGGGGCgUcGCCCGcgaACAUaGGCugCg -3' miRNA: 3'- -UGGUCUCGgA-CGGGU---UGUA-CCGugGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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