miRNA display CGI


Results 81 - 100 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5964 5' -58.2 NC_001806.1 + 82517 0.83 0.098006
Target:  5'- gGCCgguguAGGGCUUGCCCAGucccgcCAUGGCGCCCg -3'
miRNA:   3'- -UGG-----UCUCGGACGGGUU------GUACCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 88996 0.67 0.767658
Target:  5'- gGCCAGaAGCC-GCCCGacccgacgcggaggACGUcGCGCUCg -3'
miRNA:   3'- -UGGUC-UCGGaCGGGU--------------UGUAcCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 92506 0.67 0.760109
Target:  5'- uCCAGAgcGCCUaccagaaGCCCGACAagcgcgUGGaCAUCCu -3'
miRNA:   3'- uGGUCU--CGGA-------CGGGUUGU------ACC-GUGGG- -5'
5964 5' -58.2 NC_001806.1 + 93004 0.67 0.770469
Target:  5'- cGCCAGcugcaaccuGCUgcgGCCCGuCAUGGCggcgcGCCCc -3'
miRNA:   3'- -UGGUCu--------CGGa--CGGGUuGUACCG-----UGGG- -5'
5964 5' -58.2 NC_001806.1 + 94212 0.66 0.788919
Target:  5'- gGCCGGGGCCUuucucaCCCcGCugucGGuCACCCu -3'
miRNA:   3'- -UGGUCUCGGAc-----GGGuUGua--CC-GUGGG- -5'
5964 5' -58.2 NC_001806.1 + 95421 0.66 0.815525
Target:  5'- gACCGucGCCgcggGCCCGggggGCA-GGgGCCCg -3'
miRNA:   3'- -UGGUcuCGGa---CGGGU----UGUaCCgUGGG- -5'
5964 5' -58.2 NC_001806.1 + 96375 0.67 0.732176
Target:  5'- cGCCAGGGC--GCCCccgcGCGggGGCGCCg -3'
miRNA:   3'- -UGGUCUCGgaCGGGu---UGUa-CCGUGGg -5'
5964 5' -58.2 NC_001806.1 + 96513 0.69 0.641865
Target:  5'- aACgGGGGcCCUGCcacuCCGGCGccgcccgccccUGGCGCCCc -3'
miRNA:   3'- -UGgUCUC-GGACG----GGUUGU-----------ACCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 98146 0.67 0.761057
Target:  5'- cCCGGGGCCUGCUaCAGCc--GCcCCCu -3'
miRNA:   3'- uGGUCUCGGACGG-GUUGuacCGuGGG- -5'
5964 5' -58.2 NC_001806.1 + 98879 0.66 0.786186
Target:  5'- gGCCAagcuAGCCgagGCCCGggagaugauacgguACAUGGC-CCUg -3'
miRNA:   3'- -UGGUc---UCGGa--CGGGU--------------UGUACCGuGGG- -5'
5964 5' -58.2 NC_001806.1 + 101851 0.69 0.601158
Target:  5'- cACCAGcGCC-GCCUGGCG-GGCcCCCg -3'
miRNA:   3'- -UGGUCuCGGaCGGGUUGUaCCGuGGG- -5'
5964 5' -58.2 NC_001806.1 + 106363 0.68 0.692509
Target:  5'- cGCCGGuugggGCCCGGC--GGCACCCg -3'
miRNA:   3'- -UGGUCucggaCGGGUUGuaCCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 109047 0.69 0.63168
Target:  5'- --gGGGGCUcagGCCCAACGcGGC-CCCg -3'
miRNA:   3'- uggUCUCGGa--CGGGUUGUaCCGuGGG- -5'
5964 5' -58.2 NC_001806.1 + 111432 0.7 0.560811
Target:  5'- cCCGGuGCCUuuccccCCCGACc-GGCACCCg -3'
miRNA:   3'- uGGUCuCGGAc-----GGGUUGuaCCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 112374 0.68 0.712478
Target:  5'- cACCAcGGCCacgcaGCCCucCGUGGCcguGCCCc -3'
miRNA:   3'- -UGGUcUCGGa----CGGGuuGUACCG---UGGG- -5'
5964 5' -58.2 NC_001806.1 + 113401 0.66 0.801506
Target:  5'- cCCGGGGCCUGgagcugggggugggaCgCCAcgcCAUGGCcCCCg -3'
miRNA:   3'- uGGUCUCGGAC---------------G-GGUu--GUACCGuGGG- -5'
5964 5' -58.2 NC_001806.1 + 114511 0.71 0.492293
Target:  5'- cGCCGGGGCCga-CC-ACGUGGCgaacgcGCCCa -3'
miRNA:   3'- -UGGUCUCGGacgGGuUGUACCG------UGGG- -5'
5964 5' -58.2 NC_001806.1 + 115084 0.71 0.505715
Target:  5'- cGCCuGGGGCCgGCCCAGCccGuccccguguucggguGCGCCCa -3'
miRNA:   3'- -UGG-UCUCGGaCGGGUUGuaC---------------CGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 116340 0.71 0.492293
Target:  5'- aAUCGucGCCUGCCCccugGACGUGGgccuCACCCa -3'
miRNA:   3'- -UGGUcuCGGACGGG----UUGUACC----GUGGG- -5'
5964 5' -58.2 NC_001806.1 + 117690 0.67 0.761057
Target:  5'- aGCuCGGGGCCcgaGCCCG-CGUcGGCcCCCu -3'
miRNA:   3'- -UG-GUCUCGGa--CGGGUuGUA-CCGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.