Results 41 - 60 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5964 | 5' | -58.2 | NC_001806.1 | + | 112374 | 0.68 | 0.712478 |
Target: 5'- cACCAcGGCCacgcaGCCCucCGUGGCcguGCCCc -3' miRNA: 3'- -UGGUcUCGGa----CGGGuuGUACCG---UGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 111432 | 0.7 | 0.560811 |
Target: 5'- cCCGGuGCCUuuccccCCCGACc-GGCACCCg -3' miRNA: 3'- uGGUCuCGGAc-----GGGUUGuaCCGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 109047 | 0.69 | 0.63168 |
Target: 5'- --gGGGGCUcagGCCCAACGcGGC-CCCg -3' miRNA: 3'- uggUCUCGGa--CGGGUUGUaCCGuGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 106363 | 0.68 | 0.692509 |
Target: 5'- cGCCGGuugggGCCCGGC--GGCACCCg -3' miRNA: 3'- -UGGUCucggaCGGGUUGuaCCGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 101851 | 0.69 | 0.601158 |
Target: 5'- cACCAGcGCC-GCCUGGCG-GGCcCCCg -3' miRNA: 3'- -UGGUCuCGGaCGGGUUGUaCCGuGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 98879 | 0.66 | 0.786186 |
Target: 5'- gGCCAagcuAGCCgagGCCCGggagaugauacgguACAUGGC-CCUg -3' miRNA: 3'- -UGGUc---UCGGa--CGGGU--------------UGUACCGuGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 98146 | 0.67 | 0.761057 |
Target: 5'- cCCGGGGCCUGCUaCAGCc--GCcCCCu -3' miRNA: 3'- uGGUCUCGGACGG-GUUGuacCGuGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 96513 | 0.69 | 0.641865 |
Target: 5'- aACgGGGGcCCUGCcacuCCGGCGccgcccgccccUGGCGCCCc -3' miRNA: 3'- -UGgUCUC-GGACG----GGUUGU-----------ACCGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 96375 | 0.67 | 0.732176 |
Target: 5'- cGCCAGGGC--GCCCccgcGCGggGGCGCCg -3' miRNA: 3'- -UGGUCUCGgaCGGGu---UGUa-CCGUGGg -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 95421 | 0.66 | 0.815525 |
Target: 5'- gACCGucGCCgcggGCCCGggggGCA-GGgGCCCg -3' miRNA: 3'- -UGGUcuCGGa---CGGGU----UGUaCCgUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 94212 | 0.66 | 0.788919 |
Target: 5'- gGCCGGGGCCUuucucaCCCcGCugucGGuCACCCu -3' miRNA: 3'- -UGGUCUCGGAc-----GGGuUGua--CC-GUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 93004 | 0.67 | 0.770469 |
Target: 5'- cGCCAGcugcaaccuGCUgcgGCCCGuCAUGGCggcgcGCCCc -3' miRNA: 3'- -UGGUCu--------CGGa--CGGGUuGUACCG-----UGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 92506 | 0.67 | 0.760109 |
Target: 5'- uCCAGAgcGCCUaccagaaGCCCGACAagcgcgUGGaCAUCCu -3' miRNA: 3'- uGGUCU--CGGA-------CGGGUUGU------ACC-GUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 88996 | 0.67 | 0.767658 |
Target: 5'- gGCCAGaAGCC-GCCCGacccgacgcggaggACGUcGCGCUCg -3' miRNA: 3'- -UGGUC-UCGGaCGGGU--------------UGUAcCGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 82517 | 0.83 | 0.098006 |
Target: 5'- gGCCgguguAGGGCUUGCCCAGucccgcCAUGGCGCCCg -3' miRNA: 3'- -UGG-----UCUCGGACGGGUU------GUACCGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 81361 | 0.69 | 0.621496 |
Target: 5'- gGCCGGGGCgUcGCCCGcgaACAUaGGCugCg -3' miRNA: 3'- -UGGUCUCGgA-CGGGU---UGUA-CCGugGg -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 80301 | 0.7 | 0.560811 |
Target: 5'- aGCCGGuGGCCacGCCCAccACAucUGcGCGCCCc -3' miRNA: 3'- -UGGUC-UCGGa-CGGGU--UGU--AC-CGUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 79823 | 0.68 | 0.702523 |
Target: 5'- cCCAGAGCCagcGcCCCAGCuuUGGUgucugguguGCCCc -3' miRNA: 3'- uGGUCUCGGa--C-GGGUUGu-ACCG---------UGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 79741 | 0.69 | 0.611319 |
Target: 5'- cCCAGGguuggcggccGCCUGCCCuccccGACAcGGuCGCCCc -3' miRNA: 3'- uGGUCU----------CGGACGGG-----UUGUaCC-GUGGG- -5' |
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5964 | 5' | -58.2 | NC_001806.1 | + | 78686 | 0.66 | 0.788919 |
Target: 5'- uCCuGGGCgC-GCCCGucguCGUGGCGCuCCg -3' miRNA: 3'- uGGuCUCG-GaCGGGUu---GUACCGUG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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