miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5964 5' -58.2 NC_001806.1 + 78242 0.69 0.638809
Target:  5'- cCCGGGGCCucaUGUUCGGCAcgcggcuggcagacUGGCGCCg -3'
miRNA:   3'- uGGUCUCGG---ACGGGUUGU--------------ACCGUGGg -5'
5964 5' -58.2 NC_001806.1 + 77151 0.68 0.67234
Target:  5'- aGCUcggGGGGCgCgugGCCCAACAcgccgaccUGaGCGCCCg -3'
miRNA:   3'- -UGG---UCUCG-Ga--CGGGUUGU--------AC-CGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 76334 0.7 0.540905
Target:  5'- gGCCGccGAGCUUGUCCgGGCAggGGuCACCCu -3'
miRNA:   3'- -UGGU--CUCGGACGGG-UUGUa-CC-GUGGG- -5'
5964 5' -58.2 NC_001806.1 + 75567 0.69 0.63168
Target:  5'- gGCCGGGGaCCacuccCCCAGCggGcGCGCCCu -3'
miRNA:   3'- -UGGUCUC-GGac---GGGUUGuaC-CGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 74849 0.68 0.662203
Target:  5'- gGCUAaaGGCCUGUCCGGCcguccUGGCgACCCu -3'
miRNA:   3'- -UGGUc-UCGGACGGGUUGu----ACCG-UGGG- -5'
5964 5' -58.2 NC_001806.1 + 73993 0.72 0.464108
Target:  5'- gGCCGGGGCg-GCCCcGCAgggGGCuccgcGCCCa -3'
miRNA:   3'- -UGGUCUCGgaCGGGuUGUa--CCG-----UGGG- -5'
5964 5' -58.2 NC_001806.1 + 73551 0.88 0.042779
Target:  5'- cGCCuGAGCCUGgCCGACGUGGCcGCCCa -3'
miRNA:   3'- -UGGuCUCGGACgGGUUGUACCG-UGGG- -5'
5964 5' -58.2 NC_001806.1 + 73457 0.67 0.770469
Target:  5'- gGCCGGgguGGCCgGCCCGGCcgc-CGCCCu -3'
miRNA:   3'- -UGGUC---UCGGaCGGGUUGuaccGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 73079 0.8 0.152233
Target:  5'- uCCGGAGCCUGUCCucGCcucGGCACCCc -3'
miRNA:   3'- uGGUCUCGGACGGGu-UGua-CCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 72671 0.78 0.205654
Target:  5'- aACCAGAgGCCaagcGCCCgAAUcgGGCGCCCg -3'
miRNA:   3'- -UGGUCU-CGGa---CGGG-UUGuaCCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 72514 0.68 0.702523
Target:  5'- gGCCugggGGAGcCCUGCgUCGGCGUGG-GCCCc -3'
miRNA:   3'- -UGG----UCUC-GGACG-GGUUGUACCgUGGG- -5'
5964 5' -58.2 NC_001806.1 + 71336 0.66 0.778836
Target:  5'- aGCCGGAgGCCUaugggcacgGCCCAcgccaggcggaccGCGagggGGCGCCUc -3'
miRNA:   3'- -UGGUCU-CGGA---------CGGGU-------------UGUa---CCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 70918 0.71 0.482808
Target:  5'- --aAGGGCCUGCagacggagcgcgCCGugguCGUGGCGCCCu -3'
miRNA:   3'- uggUCUCGGACG------------GGUu---GUACCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 67834 0.68 0.712478
Target:  5'- gGCCAuuuGGGCC-GCCCcGCAgaaaguccGCACCCa -3'
miRNA:   3'- -UGGU---CUCGGaCGGGuUGUac------CGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 67402 0.67 0.742868
Target:  5'- uCCAGGGCCUGUUCggUAUcgucguugggggucaGCGCCCc -3'
miRNA:   3'- uGGUCUCGGACGGGuuGUAc--------------CGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 67359 0.77 0.23235
Target:  5'- gAUCAGGGCC-GCCCccccgcGCAUGGUGCCCc -3'
miRNA:   3'- -UGGUCUCGGaCGGGu-----UGUACCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 67184 0.67 0.751531
Target:  5'- cCCAG-GCCUcGCCCAGCcgcucGGuCugCCg -3'
miRNA:   3'- uGGUCuCGGA-CGGGUUGua---CC-GugGG- -5'
5964 5' -58.2 NC_001806.1 + 64901 0.66 0.77976
Target:  5'- gACCAGcGCCgGCCUcuGGCGUcGGCGCg- -3'
miRNA:   3'- -UGGUCuCGGaCGGG--UUGUA-CCGUGgg -5'
5964 5' -58.2 NC_001806.1 + 61439 0.68 0.67234
Target:  5'- cGCCAGcGCCgccggGCUCAggAUAUGGCugUCc -3'
miRNA:   3'- -UGGUCuCGGa----CGGGU--UGUACCGugGG- -5'
5964 5' -58.2 NC_001806.1 + 59617 0.73 0.419097
Target:  5'- cGCCGGGGCCUugggGcCCCGGCcgGGUACUUc -3'
miRNA:   3'- -UGGUCUCGGA----C-GGGUUGuaCCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.