miRNA display CGI


Results 81 - 100 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5964 5' -58.2 NC_001806.1 + 58695 0.66 0.788009
Target:  5'- -aCGGGGCCUgGCCCGugAUcGCcaacuccACCCg -3'
miRNA:   3'- ugGUCUCGGA-CGGGUugUAcCG-------UGGG- -5'
5964 5' -58.2 NC_001806.1 + 57045 0.69 0.601158
Target:  5'- cCCGGGGCCgggGCCCccggcugcguGCcgGGCucCCCg -3'
miRNA:   3'- uGGUCUCGGa--CGGGu---------UGuaCCGu-GGG- -5'
5964 5' -58.2 NC_001806.1 + 56299 0.74 0.352898
Target:  5'- cGCCGGAGCCccagcaccUGCgCCAACGaaauccacacGGCACCCc -3'
miRNA:   3'- -UGGUCUCGG--------ACG-GGUUGUa---------CCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 54791 0.75 0.322686
Target:  5'- cACCAGGGCCaGCCCG--GUGGCAUUg -3'
miRNA:   3'- -UGGUCUCGGaCGGGUugUACCGUGGg -5'
5964 5' -58.2 NC_001806.1 + 52557 0.7 0.550831
Target:  5'- -gCGGGGCCUcCCCcggacGACAUGGCcagcgGCCCg -3'
miRNA:   3'- ugGUCUCGGAcGGG-----UUGUACCG-----UGGG- -5'
5964 5' -58.2 NC_001806.1 + 52083 0.68 0.703521
Target:  5'- gACCGGGGUCccagcggcacgaccgGCuCCAugcaguGCAUGGCGCUCa -3'
miRNA:   3'- -UGGUCUCGGa--------------CG-GGU------UGUACCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 52020 0.66 0.812927
Target:  5'- cGCCGGuuCCUcccgcucggcggcaGCCCGGa--GGCGCCCg -3'
miRNA:   3'- -UGGUCucGGA--------------CGGGUUguaCCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 48075 0.66 0.810315
Target:  5'- aGCCAGGGgcgccguugacgaccCCU-CCCAcccuGCAUGGCaaccagGCCCg -3'
miRNA:   3'- -UGGUCUC---------------GGAcGGGU----UGUACCG------UGGG- -5'
5964 5' -58.2 NC_001806.1 + 47259 0.7 0.580912
Target:  5'- cGCCuGAGCCagGCCCAGCucAUGcccucccCACCCa -3'
miRNA:   3'- -UGGuCUCGGa-CGGGUUG--UACc------GUGGG- -5'
5964 5' -58.2 NC_001806.1 + 46109 0.7 0.57084
Target:  5'- cCCGGGGCCUGCgCg----GGCGCCUc -3'
miRNA:   3'- uGGUCUCGGACGgGuuguaCCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 45931 0.68 0.67234
Target:  5'- cGCCuGAcaCCU-CCCGcCGUGGCGCCCu -3'
miRNA:   3'- -UGGuCUc-GGAcGGGUuGUACCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 45377 0.66 0.797939
Target:  5'- gGCCAaauGUCUGCCCcgggGGCccUGGUGCCCu -3'
miRNA:   3'- -UGGUcu-CGGACGGG----UUGu-ACCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 43500 0.66 0.788919
Target:  5'- -aCGGGGCCguggcgGCCCAucaggACAagaugcGGCGCCUg -3'
miRNA:   3'- ugGUCUCGGa-----CGGGU-----UGUa-----CCGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 42914 0.67 0.741901
Target:  5'- cCCAuuuAGCCcGCCCGACGcuUGGUagagcGCCCg -3'
miRNA:   3'- uGGUc--UCGGaCGGGUUGU--ACCG-----UGGG- -5'
5964 5' -58.2 NC_001806.1 + 41209 0.73 0.427889
Target:  5'- aGCCAGAGCCccgcGCCUAAaGUGGC-CCa -3'
miRNA:   3'- -UGGUCUCGGa---CGGGUUgUACCGuGGg -5'
5964 5' -58.2 NC_001806.1 + 35596 0.67 0.722365
Target:  5'- cGCCGGAGUUuugGCCCuGGCGgguuauUGGCAaCCCc -3'
miRNA:   3'- -UGGUCUCGGa--CGGG-UUGU------ACCGU-GGG- -5'
5964 5' -58.2 NC_001806.1 + 35536 0.68 0.682445
Target:  5'- cGCCA-AGCC-GCCCAGCGagccgcucgGcGCGCCCg -3'
miRNA:   3'- -UGGUcUCGGaCGGGUUGUa--------C-CGUGGG- -5'
5964 5' -58.2 NC_001806.1 + 34409 0.67 0.761057
Target:  5'- gGCCGG-GCCggGCCgGGCcgGGCcggGCCg -3'
miRNA:   3'- -UGGUCuCGGa-CGGgUUGuaCCG---UGGg -5'
5964 5' -58.2 NC_001806.1 + 32964 0.69 0.63168
Target:  5'- gGCCGGGGCCccuuggGUCCGcCggGGC-CCCg -3'
miRNA:   3'- -UGGUCUCGGa-----CGGGUuGuaCCGuGGG- -5'
5964 5' -58.2 NC_001806.1 + 31765 0.69 0.63168
Target:  5'- -aCAGAGCCgcgGCCCg----GGCugCCu -3'
miRNA:   3'- ugGUCUCGGa--CGGGuuguaCCGugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.