Results 61 - 80 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 20991 | 0.67 | 0.425385 |
Target: 5'- aCGGCGGgggUC-GUCGGGGuCCGUGGg -3' miRNA: 3'- -GCCGCCga-GGuCGGCCCCuGGCGCCg -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 33795 | 0.67 | 0.425385 |
Target: 5'- uCGGUcucGGUagCCGGCCGGcggguGGACuCGCGGg -3' miRNA: 3'- -GCCG---CCGa-GGUCGGCC-----CCUG-GCGCCg -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 136676 | 0.67 | 0.425385 |
Target: 5'- cCGGCGaa-CCAGCCguuGGGGcugcagACCGCGGg -3' miRNA: 3'- -GCCGCcgaGGUCGG---CCCC------UGGCGCCg -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 150651 | 0.67 | 0.425385 |
Target: 5'- uCGGCGGacgCUgguuGGCCGGGccccGCCGCgcuGGCg -3' miRNA: 3'- -GCCGCCga-GG----UCGGCCCc---UGGCG---CCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 56657 | 0.67 | 0.42867 |
Target: 5'- cCGGCGGC-CCgugggaucguuggggGGUCgggGGGGACgGgGGCc -3' miRNA: 3'- -GCCGCCGaGG---------------UCGG---CCCCUGgCgCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 66816 | 0.67 | 0.417236 |
Target: 5'- cCGaGCGGggCCGGcCCGGGuGGCCgGUGuGCg -3' miRNA: 3'- -GC-CGCCgaGGUC-GGCCC-CUGG-CGC-CG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 142150 | 0.67 | 0.417236 |
Target: 5'- uGGCGGCgUCCcGUCGcGGGGugggguccgaCGUGGCg -3' miRNA: 3'- gCCGCCG-AGGuCGGC-CCCUg---------GCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 121412 | 0.67 | 0.417236 |
Target: 5'- gGGCGcGUgcugcgCCuugGGCCcGGGGGCCugGUGGCa -3' miRNA: 3'- gCCGC-CGa-----GG---UCGG-CCCCUGG--CGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 24780 | 0.67 | 0.409183 |
Target: 5'- uGcGCGGCgacgacgaCGGcCCGGGGgcccuGCCGcCGGCg -3' miRNA: 3'- gC-CGCCGag------GUC-GGCCCC-----UGGC-GCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 1847 | 0.67 | 0.409183 |
Target: 5'- gCGGCGGCgc--GUCGGGguacaggcgcgcGugCGCGGCc -3' miRNA: 3'- -GCCGCCGagguCGGCCC------------CugGCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 23794 | 0.67 | 0.409183 |
Target: 5'- aCGG-GGCc---GCCGGGGGCCGCcucuuuGGCc -3' miRNA: 3'- -GCCgCCGagguCGGCCCCUGGCG------CCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 93873 | 0.67 | 0.409183 |
Target: 5'- --cCGGCUugCCGGUCGGcGGGcCCGCGGg -3' miRNA: 3'- gccGCCGA--GGUCGGCC-CCU-GGCGCCg -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 1752 | 0.67 | 0.409183 |
Target: 5'- cCGGCGGUaCUcGCgCGGGGACaugggcacCGGCg -3' miRNA: 3'- -GCCGCCGaGGuCG-GCCCCUGgc------GCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 53864 | 0.67 | 0.412393 |
Target: 5'- aCGGCGGCcagcuguuuggcagCC-GCgCGGGGaucagggucGCCGgGGCg -3' miRNA: 3'- -GCCGCCGa-------------GGuCG-GCCCC---------UGGCgCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 2662 | 0.67 | 0.417236 |
Target: 5'- gGGCGGC---GGCCGcGGGcGCCGCcguguGGCu -3' miRNA: 3'- gCCGCCGaggUCGGC-CCC-UGGCG-----CCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 43277 | 0.67 | 0.417236 |
Target: 5'- gCGGCcGUUCC-GCCcucggaGGcGGAgCCGCGGCu -3' miRNA: 3'- -GCCGcCGAGGuCGG------CC-CCU-GGCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 103506 | 0.68 | 0.37342 |
Target: 5'- gGGUGGCUCCcgccggauccaaaugAGUcuucggaccucgCGGGGGCCGCuuaaGCg -3' miRNA: 3'- gCCGCCGAGG---------------UCG------------GCCCCUGGCGc---CG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 132751 | 0.68 | 0.370412 |
Target: 5'- uCGGCGGCagccggaugccUCCuGCCcgcggugcGGGaGGCgGUGGCg -3' miRNA: 3'- -GCCGCCG-----------AGGuCGG--------CCC-CUGgCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 99945 | 0.68 | 0.370412 |
Target: 5'- uGGCGGg-CCGcgcGCCGGGagucGACCccgcGCGGCg -3' miRNA: 3'- gCCGCCgaGGU---CGGCCC----CUGG----CGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 30032 | 0.68 | 0.370412 |
Target: 5'- aGGCGGgg-CGGCCGaGGGGCCGgacgGGCc -3' miRNA: 3'- gCCGCCgagGUCGGC-CCCUGGCg---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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