miRNA display CGI


Results 101 - 120 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5965 3' -66.7 NC_001806.1 + 42006 0.68 0.362965
Target:  5'- gGGCuGCUCCgugcuGGCCGcGGGGuuGgGGUc -3'
miRNA:   3'- gCCGcCGAGG-----UCGGC-CCCUggCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 39189 0.68 0.362965
Target:  5'- gGGCGGCggCCuugucuGCguucuUGGGGGCCG-GGCc -3'
miRNA:   3'- gCCGCCGa-GGu-----CG-----GCCCCUGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 32954 0.68 0.362965
Target:  5'- uGG-GGCcCCGGgCCGGGGccccuuggguccGCCGgGGCc -3'
miRNA:   3'- gCCgCCGaGGUC-GGCCCC------------UGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 22644 0.68 0.362965
Target:  5'- gCGcGCGGUgCCcGCCGGGuacggcGCCGCGGg -3'
miRNA:   3'- -GC-CGCCGaGGuCGGCCCc-----UGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 127752 0.68 0.362965
Target:  5'- gGGCgGGCUgCCGGgUGcGGGcCUGUGGCg -3'
miRNA:   3'- gCCG-CCGA-GGUCgGC-CCCuGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 83962 0.69 0.307191
Target:  5'- aCGGgGaaUUCGagacggucGCCGGGGACCGCGaGCc -3'
miRNA:   3'- -GCCgCcgAGGU--------CGGCCCCUGGCGC-CG- -5'
5965 3' -66.7 NC_001806.1 + 144799 0.69 0.306537
Target:  5'- aGGCcGCguaCGGcCCGGGacgaggggcccccGACCGCGGCg -3'
miRNA:   3'- gCCGcCGag-GUC-GGCCC-------------CUGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 89535 0.69 0.300698
Target:  5'- uGcGCGGCgccCCGGCCGGcGGCC-CGGUu -3'
miRNA:   3'- gC-CGCCGa--GGUCGGCCcCUGGcGCCG- -5'
5965 3' -66.7 NC_001806.1 + 58182 0.69 0.300698
Target:  5'- uGGCGGUgacgCaCAGaCUGGGGACgGgGGUc -3'
miRNA:   3'- gCCGCCGa---G-GUC-GGCCCCUGgCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 37989 0.69 0.300698
Target:  5'- uGGgGGCacgCCGGCgGGGGuCCGacaaaccauCGGCa -3'
miRNA:   3'- gCCgCCGa--GGUCGgCCCCuGGC---------GCCG- -5'
5965 3' -66.7 NC_001806.1 + 10404 0.69 0.300698
Target:  5'- aGGCGGg---AGCCGGGGGgucCCGCuGGCg -3'
miRNA:   3'- gCCGCCgaggUCGGCCCCU---GGCG-CCG- -5'
5965 3' -66.7 NC_001806.1 + 93585 0.69 0.307191
Target:  5'- uCGGCGGC-CCgggGGCCccGGGACCGgcauuugcCGGCc -3'
miRNA:   3'- -GCCGCCGaGG---UCGGc-CCCUGGC--------GCCG- -5'
5965 3' -66.7 NC_001806.1 + 143119 0.69 0.307191
Target:  5'- gGGCguGGCUgCCGGgaGGGG-CCGCGGa -3'
miRNA:   3'- gCCG--CCGA-GGUCggCCCCuGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 72387 0.69 0.307191
Target:  5'- -cGCGGCUCCuGCgGacuugacGGCCGCGGCu -3'
miRNA:   3'- gcCGCCGAGGuCGgCcc-----CUGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 20715 0.69 0.31379
Target:  5'- gGGUgGGC-CCgccgggggGGCgGGGGGCCgGCGGCc -3'
miRNA:   3'- gCCG-CCGaGG--------UCGgCCCCUGG-CGCCG- -5'
5965 3' -66.7 NC_001806.1 + 16147 0.69 0.31379
Target:  5'- aCGGC-GCUUaggagcuGCCGGGaGACCGCuGCg -3'
miRNA:   3'- -GCCGcCGAGgu-----CGGCCC-CUGGCGcCG- -5'
5965 3' -66.7 NC_001806.1 + 2698 0.69 0.31982
Target:  5'- cCGGgGGCUgccgccgCCAGCCgcccaGGGGGUCGgGGCc -3'
miRNA:   3'- -GCCgCCGA-------GGUCGG-----CCCCUGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 132905 0.69 0.320495
Target:  5'- uGGCGGCcCUGGCCgaccucggGGGGAgCG-GGCu -3'
miRNA:   3'- gCCGCCGaGGUCGG--------CCCCUgGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 46220 0.69 0.320495
Target:  5'- -cGCGGCcCCGGCgGcGGaGAccacCCGCGGCa -3'
miRNA:   3'- gcCGCCGaGGUCGgC-CC-CU----GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 101003 0.69 0.300698
Target:  5'- aGGC-GCUCCucCCGGGaGAgcggcggcCCGCGGCg -3'
miRNA:   3'- gCCGcCGAGGucGGCCC-CU--------GGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.