miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5965 3' -66.7 NC_001806.1 + 56813 0.71 0.230963
Target:  5'- uGGCGGUggucgcccccgggCCcgccaacaccgccgcGGCCaGGGcGGCCGCGGCg -3'
miRNA:   3'- gCCGCCGa------------GG---------------UCGG-CCC-CUGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 24872 0.71 0.210464
Target:  5'- gCGGCGGCgggggCCGuggagguGCUGGGGGCgGaGGCg -3'
miRNA:   3'- -GCCGCCGa----GGU-------CGGCCCCUGgCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 136995 0.71 0.24156
Target:  5'- uGGCGGCggCCGG-CGGGGAgCGCcaGCu -3'
miRNA:   3'- gCCGCCGa-GGUCgGCCCCUgGCGc-CG- -5'
5965 3' -66.7 NC_001806.1 + 42637 0.71 0.24156
Target:  5'- gCGGCGGCgucgcgUCCGGUgCGGGGGCU--GGCg -3'
miRNA:   3'- -GCCGCCG------AGGUCG-GCCCCUGGcgCCG- -5'
5965 3' -66.7 NC_001806.1 + 112328 0.71 0.220761
Target:  5'- aGGCGGg-CCAccGCCGGGaGGCCGUcgaGGCc -3'
miRNA:   3'- gCCGCCgaGGU--CGGCCC-CUGGCG---CCG- -5'
5965 3' -66.7 NC_001806.1 + 95327 0.71 0.24156
Target:  5'- gGGCGGCgCgGGCCccgacgacgacGGGGACCGUGucGCc -3'
miRNA:   3'- gCCGCCGaGgUCGG-----------CCCCUGGCGC--CG- -5'
5965 3' -66.7 NC_001806.1 + 33348 0.71 0.24156
Target:  5'- uGGCcGCcCCGGCUgcaGGGGggcccggagaGCCGCGGCa -3'
miRNA:   3'- gCCGcCGaGGUCGG---CCCC----------UGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 79143 0.71 0.238339
Target:  5'- gGGCGGCcguucgacgccucccUCCuGUCGGGGGagcuauucCCGgGGCa -3'
miRNA:   3'- gCCGCCG---------------AGGuCGGCCCCU--------GGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 136371 0.71 0.230963
Target:  5'- cCGGCGcGCUCCgcGGCCuccGcGACCGUGGCc -3'
miRNA:   3'- -GCCGC-CGAGG--UCGGcc-C-CUGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 20622 0.71 0.215315
Target:  5'- gGGCGG----GGCCGGGGguucgaccaacggGCCGCGGCc -3'
miRNA:   3'- gCCGCCgaggUCGGCCCC-------------UGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 144555 0.71 0.230963
Target:  5'- gGGUGGUgcgaaagacuuUCCGGgcgcguCCGGGuGCCGCGGCu -3'
miRNA:   3'- gCCGCCG-----------AGGUC------GGCCCcUGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 74950 0.71 0.235683
Target:  5'- aCGGCGGCgcugCgGGCggacaugUGGGGGCUGCuggGGCa -3'
miRNA:   3'- -GCCGCCGa---GgUCG-------GCCCCUGGCG---CCG- -5'
5965 3' -66.7 NC_001806.1 + 119592 0.71 0.235683
Target:  5'- uGGCGGgUCUggAGCCccccggcGGGGGCCGCuuuguGGCc -3'
miRNA:   3'- gCCGCCgAGG--UCGG-------CCCCUGGCG-----CCG- -5'
5965 3' -66.7 NC_001806.1 + 51388 0.7 0.269236
Target:  5'- cCGGaggGGCUCCuuagcgcGGCCGuGGGcGCCuuGCGGCa -3'
miRNA:   3'- -GCCg--CCGAGG-------UCGGC-CCC-UGG--CGCCG- -5'
5965 3' -66.7 NC_001806.1 + 4804 0.7 0.269827
Target:  5'- uCGuCGGCUCgaaaGGCgGGGGuCCGgGGCg -3'
miRNA:   3'- -GCcGCCGAGg---UCGgCCCCuGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 119751 0.7 0.258212
Target:  5'- cCGGCGGCgaCGGCCGGacuGGCUGUGGa -3'
miRNA:   3'- -GCCGCCGagGUCGGCCc--CUGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 86071 0.7 0.258212
Target:  5'- gCGGCGGCgUCUAGCuCGcGGAggGCGGCc -3'
miRNA:   3'- -GCCGCCG-AGGUCG-GCcCCUggCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 10114 0.7 0.2722
Target:  5'- gCGGCgcacGGCgcgUCGGCCGGGGacagacauucugggaGCUGCGGg -3'
miRNA:   3'- -GCCG----CCGa--GGUCGGCCCC---------------UGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 147225 0.7 0.247009
Target:  5'- aGGCGGCcCCcGCgGGGG-UCGgGGCc -3'
miRNA:   3'- gCCGCCGaGGuCGgCCCCuGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 3306 0.7 0.247009
Target:  5'- gCGGCGGCggCGGggaagCGGGGcCCGCGGg -3'
miRNA:   3'- -GCCGCCGagGUCg----GCCCCuGGCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.