miRNA display CGI


Results 81 - 100 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5965 3' -66.7 NC_001806.1 + 119751 0.7 0.258212
Target:  5'- cCGGCGGCgaCGGCCGGacuGGCUGUGGa -3'
miRNA:   3'- -GCCGCCGagGUCGGCCc--CUGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 86071 0.7 0.258212
Target:  5'- gCGGCGGCgUCUAGCuCGcGGAggGCGGCc -3'
miRNA:   3'- -GCCGCCG-AGGUCG-GCcCCUggCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 23305 0.7 0.247009
Target:  5'- cCGGCccGGC-CCGGCCGcccGGaGGCgGCGGCc -3'
miRNA:   3'- -GCCG--CCGaGGUCGGC---CC-CUGgCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 147225 0.7 0.247009
Target:  5'- aGGCGGCcCCcGCgGGGG-UCGgGGCc -3'
miRNA:   3'- gCCGCCGaGGuCGgCCCCuGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 132638 0.7 0.25256
Target:  5'- uCGGCacGGgaCCugguGCgCGGGG-CCGCGGCc -3'
miRNA:   3'- -GCCG--CCgaGGu---CG-GCCCCuGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 3306 0.7 0.247009
Target:  5'- gCGGCGGCggCGGggaagCGGGGcCCGCGGg -3'
miRNA:   3'- -GCCGCCGagGUCg----GCCCCuGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 27459 0.69 0.292417
Target:  5'- gGGCGGCcCCGGCCGcccuucccgcuuccGGcaauucCCGCGGCc -3'
miRNA:   3'- gCCGCCGaGGUCGGC--------------CCcu----GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 10404 0.69 0.300698
Target:  5'- aGGCGGg---AGCCGGGGGgucCCGCuGGCg -3'
miRNA:   3'- gCCGCCgaggUCGGCCCCU---GGCG-CCG- -5'
5965 3' -66.7 NC_001806.1 + 20312 0.69 0.288033
Target:  5'- gGGCGGUcccgcccgCCGGCCaauggGGGGGCgGCaaGGCg -3'
miRNA:   3'- gCCGCCGa-------GGUCGG-----CCCCUGgCG--CCG- -5'
5965 3' -66.7 NC_001806.1 + 144799 0.69 0.306537
Target:  5'- aGGCcGCguaCGGcCCGGGacgaggggcccccGACCGCGGCg -3'
miRNA:   3'- gCCGcCGag-GUC-GGCCC-------------CUGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 89535 0.69 0.300698
Target:  5'- uGcGCGGCgccCCGGCCGGcGGCC-CGGUu -3'
miRNA:   3'- gC-CGCCGa--GGUCGGCCcCUGGcGCCG- -5'
5965 3' -66.7 NC_001806.1 + 83962 0.69 0.307191
Target:  5'- aCGGgGaaUUCGagacggucGCCGGGGACCGCGaGCc -3'
miRNA:   3'- -GCCgCcgAGGU--------CGGCCCCUGGCGC-CG- -5'
5965 3' -66.7 NC_001806.1 + 58182 0.69 0.300698
Target:  5'- uGGCGGUgacgCaCAGaCUGGGGACgGgGGUc -3'
miRNA:   3'- gCCGCCGa---G-GUC-GGCCCCUGgCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 37989 0.69 0.300698
Target:  5'- uGGgGGCacgCCGGCgGGGGuCCGacaaaccauCGGCa -3'
miRNA:   3'- gCCgCCGa--GGUCGgCCCCuGGC---------GCCG- -5'
5965 3' -66.7 NC_001806.1 + 22544 0.69 0.288033
Target:  5'- uGGCGcGCgagaaCgCGGCgcugaCGGGGGCCGCGGg -3'
miRNA:   3'- gCCGC-CGa----G-GUCG-----GCCCCUGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 70855 0.69 0.300055
Target:  5'- -cGCGGCg-CGGCCGcGGGAcccgagcCCGUGGCc -3'
miRNA:   3'- gcCGCCGagGUCGGC-CCCU-------GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 100107 0.69 0.288033
Target:  5'- gCGGcCGGCUgaccgCCcGCCuGGcGGuCCGCGGCu -3'
miRNA:   3'- -GCC-GCCGA-----GGuCGG-CC-CCuGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 51025 0.69 0.288033
Target:  5'- gCGGCGGgUCCGuGuuGGGc-CCGCGGg -3'
miRNA:   3'- -GCCGCCgAGGU-CggCCCcuGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 27828 0.69 0.288033
Target:  5'- uGGgGGCgCCGGguugguccCCGGGGAcggggccgccCCGCGGUg -3'
miRNA:   3'- gCCgCCGaGGUC--------GGCCCCU----------GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 93585 0.69 0.307191
Target:  5'- uCGGCGGC-CCgggGGCCccGGGACCGgcauuugcCGGCc -3'
miRNA:   3'- -GCCGCCGaGG---UCGGc-CCCUGGC--------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.