miRNA display CGI


Results 101 - 120 of 215 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5965 3' -66.7 NC_001806.1 + 83962 0.69 0.307191
Target:  5'- aCGGgGaaUUCGagacggucGCCGGGGACCGCGaGCc -3'
miRNA:   3'- -GCCgCcgAGGU--------CGGCCCCUGGCGC-CG- -5'
5965 3' -66.7 NC_001806.1 + 120863 0.69 0.323208
Target:  5'- cCGGCGGCcCCuGgcgccgccuggucccCCGGGGACCuugcccCGGCc -3'
miRNA:   3'- -GCCGCCGaGGuC---------------GGCCCCUGGc-----GCCG- -5'
5965 3' -66.7 NC_001806.1 + 94280 0.69 0.294313
Target:  5'- gCGaGCGGCUCCugggcAGCCuGGagacguucgcGACCGCGGg -3'
miRNA:   3'- -GC-CGCCGAGG-----UCGGcCC----------CUGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 27459 0.69 0.292417
Target:  5'- gGGCGGCcCCGGCCGcccuucccgcuuccGGcaauucCCGCGGCc -3'
miRNA:   3'- gCCGCCGaGGUCGGC--------------CCcu----GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 20312 0.69 0.288033
Target:  5'- gGGCGGUcccgcccgCCGGCCaauggGGGGGCgGCaaGGCg -3'
miRNA:   3'- gCCGCCGa-------GGUCGG-----CCCCUGgCG--CCG- -5'
5965 3' -66.7 NC_001806.1 + 27828 0.69 0.288033
Target:  5'- uGGgGGCgCCGGguugguccCCGGGGAcggggccgccCCGCGGUg -3'
miRNA:   3'- gCCgCCGaGGUC--------GGCCCCU----------GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 70855 0.69 0.300055
Target:  5'- -cGCGGCg-CGGCCGcGGGAcccgagcCCGUGGCc -3'
miRNA:   3'- gcCGCCGagGUCGGC-CCCU-------GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 51025 0.69 0.288033
Target:  5'- gCGGCGGgUCCGuGuuGGGc-CCGCGGg -3'
miRNA:   3'- -GCCGCCgAGGU-CggCCCcuGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 22544 0.69 0.288033
Target:  5'- uGGCGcGCgagaaCgCGGCgcugaCGGGGGCCGCGGg -3'
miRNA:   3'- gCCGC-CGa----G-GUCG-----GCCCCUGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 100107 0.69 0.288033
Target:  5'- gCGGcCGGCUgaccgCCcGCCuGGcGGuCCGCGGCu -3'
miRNA:   3'- -GCC-GCCGA-----GGuCGG-CC-CCuGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 34316 0.68 0.354893
Target:  5'- gGGCGGCgcgCCGGaCGGGGcGCUGgagauaaCGGCc -3'
miRNA:   3'- gCCGCCGa--GGUCgGCCCC-UGGC-------GCCG- -5'
5965 3' -66.7 NC_001806.1 + 3002 0.68 0.348384
Target:  5'- gCGGCGGCcgCCAGCgcguCGGcggcguccGGugCGCuGGCc -3'
miRNA:   3'- -GCCGCCGa-GGUCG----GCC--------CCugGCG-CCG- -5'
5965 3' -66.7 NC_001806.1 + 2218 0.68 0.347667
Target:  5'- aGGCGGCcgugUCCggcccgcacAGCCGGuuggccaGGGCCGCcagcaGGCa -3'
miRNA:   3'- gCCGCCG----AGG---------UCGGCC-------CCUGGCG-----CCG- -5'
5965 3' -66.7 NC_001806.1 + 95287 0.68 0.341253
Target:  5'- uGGCGcGCaUggGGgCGGGGGgCGCGGCg -3'
miRNA:   3'- gCCGC-CG-AggUCgGCCCCUgGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 65796 0.68 0.337025
Target:  5'- uCGGCGGgUCCGGCgaguggUGGGGucgagauucgacaagGCCGCuGCc -3'
miRNA:   3'- -GCCGCCgAGGUCG------GCCCC---------------UGGCGcCG- -5'
5965 3' -66.7 NC_001806.1 + 73974 0.68 0.334227
Target:  5'- uCGGCGuaaugcccGCcCCGGCCGGGGcggccCCGCagggGGCu -3'
miRNA:   3'- -GCCGC--------CGaGGUCGGCCCCu----GGCG----CCG- -5'
5965 3' -66.7 NC_001806.1 + 24155 0.68 0.334227
Target:  5'- gGGCuGCUcgCCAgcGCCGGcGACCGgCGGCu -3'
miRNA:   3'- gCCGcCGA--GGU--CGGCCcCUGGC-GCCG- -5'
5965 3' -66.7 NC_001806.1 + 115090 0.68 0.33353
Target:  5'- gGGcCGGC-CCAGCCcguccccguguucGGGuGcgcccagguGCCGCGGCg -3'
miRNA:   3'- gCC-GCCGaGGUCGG-------------CCC-C---------UGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 77259 0.68 0.326622
Target:  5'- uGGCGGaauUCgacgcggUGGCCGGGGACCuggccccauggGCGGUg -3'
miRNA:   3'- gCCGCCg--AG-------GUCGGCCCCUGG-----------CGCCG- -5'
5965 3' -66.7 NC_001806.1 + 145644 0.68 0.327308
Target:  5'- uGGCGGgU---GCCgGGGGACCGgGGUg -3'
miRNA:   3'- gCCGCCgAgguCGG-CCCCUGGCgCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.