miRNA display CGI


Results 121 - 140 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5965 3' -66.7 NC_001806.1 + 132751 0.68 0.370412
Target:  5'- uCGGCGGCagccggaugccUCCuGCCcgcggugcGGGaGGCgGUGGCg -3'
miRNA:   3'- -GCCGCCG-----------AGGuCGG--------CCC-CUGgCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 103506 0.68 0.37342
Target:  5'- gGGUGGCUCCcgccggauccaaaugAGUcuucggaccucgCGGGGGCCGCuuaaGCg -3'
miRNA:   3'- gCCGCCGAGG---------------UCG------------GCCCCUGGCGc---CG- -5'
5965 3' -66.7 NC_001806.1 + 40917 0.68 0.37342
Target:  5'- aCGGCgaauccguuucgcgaGGUUCC-GCCGuGGGGCCgacuucGUGGCa -3'
miRNA:   3'- -GCCG---------------CCGAGGuCGGC-CCCUGG------CGCCG- -5'
5965 3' -66.7 NC_001806.1 + 127752 0.68 0.362965
Target:  5'- gGGCgGGCUgCCGGgUGcGGGcCUGUGGCg -3'
miRNA:   3'- gCCG-CCGA-GGUCgGC-CCCuGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 76639 0.68 0.362965
Target:  5'- aGGUGGUcgCCGucCCGGcGACCGUGGCc -3'
miRNA:   3'- gCCGCCGa-GGUc-GGCCcCUGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 25612 0.68 0.362965
Target:  5'- gGGagGGCUggGGCCGGGGaggGCUGgGGCu -3'
miRNA:   3'- gCCg-CCGAggUCGGCCCC---UGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 77259 0.68 0.326622
Target:  5'- uGGCGGaauUCgacgcggUGGCCGGGGACCuggccccauggGCGGUg -3'
miRNA:   3'- gCCGCCg--AG-------GUCGGCCCCUGG-----------CGCCG- -5'
5965 3' -66.7 NC_001806.1 + 145644 0.68 0.327308
Target:  5'- uGGCGGgU---GCCgGGGGACCGgGGUg -3'
miRNA:   3'- gCCGCCgAgguCGG-CCCCUGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 94725 0.68 0.327308
Target:  5'- gCGGCGGUaCCugccccacgccGCCGGGcugucggacgccGACCGCGcGCg -3'
miRNA:   3'- -GCCGCCGaGGu----------CGGCCC------------CUGGCGC-CG- -5'
5965 3' -66.7 NC_001806.1 + 115090 0.68 0.33353
Target:  5'- gGGcCGGC-CCAGCCcguccccguguucGGGuGcgcccagguGCCGCGGCg -3'
miRNA:   3'- gCC-GCCGaGGUCGG-------------CCC-C---------UGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 24155 0.68 0.334227
Target:  5'- gGGCuGCUcgCCAgcGCCGGcGACCGgCGGCu -3'
miRNA:   3'- gCCGcCGA--GGU--CGGCCcCUGGC-GCCG- -5'
5965 3' -66.7 NC_001806.1 + 73974 0.68 0.334227
Target:  5'- uCGGCGuaaugcccGCcCCGGCCGGGGcggccCCGCagggGGCu -3'
miRNA:   3'- -GCCGC--------CGaGGUCGGCCCCu----GGCG----CCG- -5'
5965 3' -66.7 NC_001806.1 + 65796 0.68 0.337025
Target:  5'- uCGGCGGgUCCGGCgaguggUGGGGucgagauucgacaagGCCGCuGCc -3'
miRNA:   3'- -GCCGCCgAGGUCG------GCCCC---------------UGGCGcCG- -5'
5965 3' -66.7 NC_001806.1 + 2218 0.68 0.347667
Target:  5'- aGGCGGCcgugUCCggcccgcacAGCCGGuuggccaGGGCCGCcagcaGGCa -3'
miRNA:   3'- gCCGCCG----AGG---------UCGGCC-------CCUGGCG-----CCG- -5'
5965 3' -66.7 NC_001806.1 + 3002 0.68 0.348384
Target:  5'- gCGGCGGCcgCCAGCgcguCGGcggcguccGGugCGCuGGCc -3'
miRNA:   3'- -GCCGCCGa-GGUCG----GCC--------CCugGCG-CCG- -5'
5965 3' -66.7 NC_001806.1 + 34316 0.68 0.354893
Target:  5'- gGGCGGCgcgCCGGaCGGGGcGCUGgagauaaCGGCc -3'
miRNA:   3'- gCCGCCGa--GGUCgGCCCC-UGGC-------GCCG- -5'
5965 3' -66.7 NC_001806.1 + 103919 0.68 0.355622
Target:  5'- -uGCGGgaCgAGCCGGGucaCGCGGCu -3'
miRNA:   3'- gcCGCCgaGgUCGGCCCcugGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 103816 0.68 0.358546
Target:  5'- gCGGCGGCgacgggcucgcugggUCCuaGGCUcaauGGGGACCGUauacguggacaGGCu -3'
miRNA:   3'- -GCCGCCG---------------AGG--UCGG----CCCCUGGCG-----------CCG- -5'
5965 3' -66.7 NC_001806.1 + 2942 0.68 0.360751
Target:  5'- gGGCGGCcgggCCgGGCCGGGacucuugcgcuugcGccccucCCGCGGCg -3'
miRNA:   3'- gCCGCCGa---GG-UCGGCCC--------------Cu-----GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 148127 0.67 0.401228
Target:  5'- gGGgGGCUgcgugagacgcCCcGCCcgucacGGGGGgCGCGGCg -3'
miRNA:   3'- gCCgCCGA-----------GGuCGG------CCCCUgGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.