Results 61 - 80 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 150868 | 0.71 | 0.225813 |
Target: 5'- gGGcCGGCUCCgcgGGCCaGGGcCCG-GGCa -3' miRNA: 3'- gCC-GCCGAGG---UCGGcCCCuGGCgCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 72068 | 0.71 | 0.225813 |
Target: 5'- aGGUgGGCUUCu-UCGGGGAgcCCGCGGCg -3' miRNA: 3'- gCCG-CCGAGGucGGCCCCU--GGCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 56813 | 0.71 | 0.230963 |
Target: 5'- uGGCGGUggucgcccccgggCCcgccaacaccgccgcGGCCaGGGcGGCCGCGGCg -3' miRNA: 3'- gCCGCCGa------------GG---------------UCGG-CCC-CUGGCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 136371 | 0.71 | 0.230963 |
Target: 5'- cCGGCGcGCUCCgcGGCCuccGcGACCGUGGCc -3' miRNA: 3'- -GCCGC-CGAGG--UCGGcc-C-CUGGCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 144555 | 0.71 | 0.230963 |
Target: 5'- gGGUGGUgcgaaagacuuUCCGGgcgcguCCGGGuGCCGCGGCu -3' miRNA: 3'- gCCGCCG-----------AGGUC------GGCCCcUGGCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 119592 | 0.71 | 0.235683 |
Target: 5'- uGGCGGgUCUggAGCCccccggcGGGGGCCGCuuuguGGCc -3' miRNA: 3'- gCCGCCgAGG--UCGG-------CCCCUGGCG-----CCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 74950 | 0.71 | 0.235683 |
Target: 5'- aCGGCGGCgcugCgGGCggacaugUGGGGGCUGCuggGGCa -3' miRNA: 3'- -GCCGCCGa---GgUCG-------GCCCCUGGCG---CCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 79143 | 0.71 | 0.238339 |
Target: 5'- gGGCGGCcguucgacgccucccUCCuGUCGGGGGagcuauucCCGgGGCa -3' miRNA: 3'- gCCGCCG---------------AGGuCGGCCCCU--------GGCgCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 33348 | 0.71 | 0.24156 |
Target: 5'- uGGCcGCcCCGGCUgcaGGGGggcccggagaGCCGCGGCa -3' miRNA: 3'- gCCGcCGaGGUCGG---CCCC----------UGGCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 95327 | 0.71 | 0.24156 |
Target: 5'- gGGCGGCgCgGGCCccgacgacgacGGGGACCGUGucGCc -3' miRNA: 3'- gCCGCCGaGgUCGG-----------CCCCUGGCGC--CG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 149805 | 0.71 | 0.24156 |
Target: 5'- gGGCGGC-CCucaGGCCGGcGGGuacucgcuCCGgGGCg -3' miRNA: 3'- gCCGCCGaGG---UCGGCC-CCU--------GGCgCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 42637 | 0.71 | 0.24156 |
Target: 5'- gCGGCGGCgucgcgUCCGGUgCGGGGGCU--GGCg -3' miRNA: 3'- -GCCGCCG------AGGUCG-GCCCCUGGcgCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 136995 | 0.71 | 0.24156 |
Target: 5'- uGGCGGCggCCGG-CGGGGAgCGCcaGCu -3' miRNA: 3'- gCCGCCGa-GGUCgGCCCCUgGCGc-CG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 23305 | 0.7 | 0.247009 |
Target: 5'- cCGGCccGGC-CCGGCCGcccGGaGGCgGCGGCc -3' miRNA: 3'- -GCCG--CCGaGGUCGGC---CC-CUGgCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 147225 | 0.7 | 0.247009 |
Target: 5'- aGGCGGCcCCcGCgGGGG-UCGgGGCc -3' miRNA: 3'- gCCGCCGaGGuCGgCCCCuGGCgCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 3306 | 0.7 | 0.247009 |
Target: 5'- gCGGCGGCggCGGggaagCGGGGcCCGCGGg -3' miRNA: 3'- -GCCGCCGagGUCg----GCCCCuGGCGCCg -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 132638 | 0.7 | 0.25256 |
Target: 5'- uCGGCacGGgaCCugguGCgCGGGG-CCGCGGCc -3' miRNA: 3'- -GCCG--CCgaGGu---CG-GCCCCuGGCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 66642 | 0.7 | 0.25256 |
Target: 5'- gGGcCGGCUCCAacccGCgCGGGGGgaGCuGGCu -3' miRNA: 3'- gCC-GCCGAGGU----CG-GCCCCUggCG-CCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 86071 | 0.7 | 0.258212 |
Target: 5'- gCGGCGGCgUCUAGCuCGcGGAggGCGGCc -3' miRNA: 3'- -GCCGCCG-AGGUCG-GCcCCUggCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 119751 | 0.7 | 0.258212 |
Target: 5'- cCGGCGGCgaCGGCCGGacuGGCUGUGGa -3' miRNA: 3'- -GCCGCCGagGUCGGCCc--CUGGCGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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