miRNA display CGI


Results 81 - 100 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5965 3' -66.7 NC_001806.1 + 51388 0.7 0.269236
Target:  5'- cCGGaggGGCUCCuuagcgcGGCCGuGGGcGCCuuGCGGCa -3'
miRNA:   3'- -GCCg--CCGAGG-------UCGGC-CCC-UGG--CGCCG- -5'
5965 3' -66.7 NC_001806.1 + 4804 0.7 0.269827
Target:  5'- uCGuCGGCUCgaaaGGCgGGGGuCCGgGGCg -3'
miRNA:   3'- -GCcGCCGAGg---UCGgCCCCuGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 2869 0.7 0.269827
Target:  5'- gGGCgcgGGCgUCCgAGCCGGGGGcguCCGCGccGCu -3'
miRNA:   3'- gCCG---CCG-AGG-UCGGCCCCU---GGCGC--CG- -5'
5965 3' -66.7 NC_001806.1 + 10114 0.7 0.2722
Target:  5'- gCGGCgcacGGCgcgUCGGCCGGGGacagacauucugggaGCUGCGGg -3'
miRNA:   3'- -GCCG----CCGa--GGUCGGCCCC---------------UGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 32550 0.7 0.275189
Target:  5'- uGGCGGUcuUCCAGCCggcccuuagauaaGGGGGCaguugGUGGUc -3'
miRNA:   3'- gCCGCCG--AGGUCGG-------------CCCCUGg----CGCCG- -5'
5965 3' -66.7 NC_001806.1 + 4347 0.7 0.281859
Target:  5'- cCGGCGGCgcucgaugCGGcCCGcGGaGGCCGCGGg -3'
miRNA:   3'- -GCCGCCGag------GUC-GGC-CC-CUGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 20312 0.69 0.288033
Target:  5'- gGGCGGUcccgcccgCCGGCCaauggGGGGGCgGCaaGGCg -3'
miRNA:   3'- gCCGCCGa-------GGUCGG-----CCCCUGgCG--CCG- -5'
5965 3' -66.7 NC_001806.1 + 22544 0.69 0.288033
Target:  5'- uGGCGcGCgagaaCgCGGCgcugaCGGGGGCCGCGGg -3'
miRNA:   3'- gCCGC-CGa----G-GUCG-----GCCCCUGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 100107 0.69 0.288033
Target:  5'- gCGGcCGGCUgaccgCCcGCCuGGcGGuCCGCGGCu -3'
miRNA:   3'- -GCC-GCCGA-----GGuCGG-CC-CCuGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 27828 0.69 0.288033
Target:  5'- uGGgGGCgCCGGguugguccCCGGGGAcggggccgccCCGCGGUg -3'
miRNA:   3'- gCCgCCGaGGUC--------GGCCCCU----------GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 51025 0.69 0.288033
Target:  5'- gCGGCGGgUCCGuGuuGGGc-CCGCGGg -3'
miRNA:   3'- -GCCGCCgAGGU-CggCCCcuGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 27459 0.69 0.292417
Target:  5'- gGGCGGCcCCGGCCGcccuucccgcuuccGGcaauucCCGCGGCc -3'
miRNA:   3'- gCCGCCGaGGUCGGC--------------CCcu----GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 94280 0.69 0.294313
Target:  5'- gCGaGCGGCUCCugggcAGCCuGGagacguucgcGACCGCGGg -3'
miRNA:   3'- -GC-CGCCGAGG-----UCGGcCC----------CUGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 70855 0.69 0.300055
Target:  5'- -cGCGGCg-CGGCCGcGGGAcccgagcCCGUGGCc -3'
miRNA:   3'- gcCGCCGagGUCGGC-CCCU-------GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 101003 0.69 0.300698
Target:  5'- aGGC-GCUCCucCCGGGaGAgcggcggcCCGCGGCg -3'
miRNA:   3'- gCCGcCGAGGucGGCCC-CU--------GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 37989 0.69 0.300698
Target:  5'- uGGgGGCacgCCGGCgGGGGuCCGacaaaccauCGGCa -3'
miRNA:   3'- gCCgCCGa--GGUCGgCCCCuGGC---------GCCG- -5'
5965 3' -66.7 NC_001806.1 + 58182 0.69 0.300698
Target:  5'- uGGCGGUgacgCaCAGaCUGGGGACgGgGGUc -3'
miRNA:   3'- gCCGCCGa---G-GUC-GGCCCCUGgCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 89535 0.69 0.300698
Target:  5'- uGcGCGGCgccCCGGCCGGcGGCC-CGGUu -3'
miRNA:   3'- gC-CGCCGa--GGUCGGCCcCUGGcGCCG- -5'
5965 3' -66.7 NC_001806.1 + 10404 0.69 0.300698
Target:  5'- aGGCGGg---AGCCGGGGGgucCCGCuGGCg -3'
miRNA:   3'- gCCGCCgaggUCGGCCCCU---GGCG-CCG- -5'
5965 3' -66.7 NC_001806.1 + 144799 0.69 0.306537
Target:  5'- aGGCcGCguaCGGcCCGGGacgaggggcccccGACCGCGGCg -3'
miRNA:   3'- gCCGcCGag-GUC-GGCCC-------------CUGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.