miRNA display CGI


Results 101 - 120 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5965 3' -66.7 NC_001806.1 + 83962 0.69 0.307191
Target:  5'- aCGGgGaaUUCGagacggucGCCGGGGACCGCGaGCc -3'
miRNA:   3'- -GCCgCcgAGGU--------CGGCCCCUGGCGC-CG- -5'
5965 3' -66.7 NC_001806.1 + 93585 0.69 0.307191
Target:  5'- uCGGCGGC-CCgggGGCCccGGGACCGgcauuugcCGGCc -3'
miRNA:   3'- -GCCGCCGaGG---UCGGc-CCCUGGC--------GCCG- -5'
5965 3' -66.7 NC_001806.1 + 143119 0.69 0.307191
Target:  5'- gGGCguGGCUgCCGGgaGGGG-CCGCGGa -3'
miRNA:   3'- gCCG--CCGA-GGUCggCCCCuGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 72387 0.69 0.307191
Target:  5'- -cGCGGCUCCuGCgGacuugacGGCCGCGGCu -3'
miRNA:   3'- gcCGCCGAGGuCGgCcc-----CUGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 16147 0.69 0.31379
Target:  5'- aCGGC-GCUUaggagcuGCCGGGaGACCGCuGCg -3'
miRNA:   3'- -GCCGcCGAGgu-----CGGCCC-CUGGCGcCG- -5'
5965 3' -66.7 NC_001806.1 + 20715 0.69 0.31379
Target:  5'- gGGUgGGC-CCgccgggggGGCgGGGGGCCgGCGGCc -3'
miRNA:   3'- gCCG-CCGaGG--------UCGgCCCCUGG-CGCCG- -5'
5965 3' -66.7 NC_001806.1 + 2698 0.69 0.31982
Target:  5'- cCGGgGGCUgccgccgCCAGCCgcccaGGGGGUCGgGGCc -3'
miRNA:   3'- -GCCgCCGA-------GGUCGG-----CCCCUGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 46220 0.69 0.320495
Target:  5'- -cGCGGCcCCGGCgGcGGaGAccacCCGCGGCa -3'
miRNA:   3'- gcCGCCGaGGUCGgC-CC-CU----GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 132905 0.69 0.320495
Target:  5'- uGGCGGCcCUGGCCgaccucggGGGGAgCG-GGCu -3'
miRNA:   3'- gCCGCCGaGGUCGG--------CCCCUgGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 120863 0.69 0.323208
Target:  5'- cCGGCGGCcCCuGgcgccgccuggucccCCGGGGACCuugcccCGGCc -3'
miRNA:   3'- -GCCGCCGaGGuC---------------GGCCCCUGGc-----GCCG- -5'
5965 3' -66.7 NC_001806.1 + 77259 0.68 0.326622
Target:  5'- uGGCGGaauUCgacgcggUGGCCGGGGACCuggccccauggGCGGUg -3'
miRNA:   3'- gCCGCCg--AG-------GUCGGCCCCUGG-----------CGCCG- -5'
5965 3' -66.7 NC_001806.1 + 145644 0.68 0.327308
Target:  5'- uGGCGGgU---GCCgGGGGACCGgGGUg -3'
miRNA:   3'- gCCGCCgAgguCGG-CCCCUGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 94725 0.68 0.327308
Target:  5'- gCGGCGGUaCCugccccacgccGCCGGGcugucggacgccGACCGCGcGCg -3'
miRNA:   3'- -GCCGCCGaGGu----------CGGCCC------------CUGGCGC-CG- -5'
5965 3' -66.7 NC_001806.1 + 115090 0.68 0.33353
Target:  5'- gGGcCGGC-CCAGCCcguccccguguucGGGuGcgcccagguGCCGCGGCg -3'
miRNA:   3'- gCC-GCCGaGGUCGG-------------CCC-C---------UGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 73974 0.68 0.334227
Target:  5'- uCGGCGuaaugcccGCcCCGGCCGGGGcggccCCGCagggGGCu -3'
miRNA:   3'- -GCCGC--------CGaGGUCGGCCCCu----GGCG----CCG- -5'
5965 3' -66.7 NC_001806.1 + 24155 0.68 0.334227
Target:  5'- gGGCuGCUcgCCAgcGCCGGcGACCGgCGGCu -3'
miRNA:   3'- gCCGcCGA--GGU--CGGCCcCUGGC-GCCG- -5'
5965 3' -66.7 NC_001806.1 + 65796 0.68 0.337025
Target:  5'- uCGGCGGgUCCGGCgaguggUGGGGucgagauucgacaagGCCGCuGCc -3'
miRNA:   3'- -GCCGCCgAGGUCG------GCCCC---------------UGGCGcCG- -5'
5965 3' -66.7 NC_001806.1 + 95287 0.68 0.341253
Target:  5'- uGGCGcGCaUggGGgCGGGGGgCGCGGCg -3'
miRNA:   3'- gCCGC-CG-AggUCgGCCCCUgGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 2218 0.68 0.347667
Target:  5'- aGGCGGCcgugUCCggcccgcacAGCCGGuuggccaGGGCCGCcagcaGGCa -3'
miRNA:   3'- gCCGCCG----AGG---------UCGGCC-------CCUGGCG-----CCG- -5'
5965 3' -66.7 NC_001806.1 + 3002 0.68 0.348384
Target:  5'- gCGGCGGCcgCCAGCgcguCGGcggcguccGGugCGCuGGCc -3'
miRNA:   3'- -GCCGCCGa-GGUCG----GCC--------CCugGCG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.