Results 81 - 100 of 215 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 30032 | 0.68 | 0.370412 |
Target: 5'- aGGCGGgg-CGGCCGaGGGGCCGgacgGGCc -3' miRNA: 3'- gCCGCCgagGUCGGC-CCCUGGCg---CCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 30739 | 0.68 | 0.369663 |
Target: 5'- gCGGgGGCcgccucuUCCGccGCCGGGG-CCGCGu- -3' miRNA: 3'- -GCCgCCG-------AGGU--CGGCCCCuGGCGCcg -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 69594 | 0.68 | 0.369663 |
Target: 5'- gGGCGGCUCUgcgaggcggucGGCCugucgGGGGGCguucuaagccagaCGCuGGCg -3' miRNA: 3'- gCCGCCGAGG-----------UCGG-----CCCCUG-------------GCG-CCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 25612 | 0.68 | 0.362965 |
Target: 5'- gGGagGGCUggGGCCGGGGaggGCUGgGGCu -3' miRNA: 3'- gCCg-CCGAggUCGGCCCC---UGGCgCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 76639 | 0.68 | 0.362965 |
Target: 5'- aGGUGGUcgCCGucCCGGcGACCGUGGCc -3' miRNA: 3'- gCCGCCGa-GGUc-GGCCcCUGGCGCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 127752 | 0.68 | 0.362965 |
Target: 5'- gGGCgGGCUgCCGGgUGcGGGcCUGUGGCg -3' miRNA: 3'- gCCG-CCGA-GGUCgGC-CCCuGGCGCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 22644 | 0.68 | 0.362965 |
Target: 5'- gCGcGCGGUgCCcGCCGGGuacggcGCCGCGGg -3' miRNA: 3'- -GC-CGCCGaGGuCGGCCCc-----UGGCGCCg -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 32954 | 0.68 | 0.362965 |
Target: 5'- uGG-GGCcCCGGgCCGGGGccccuuggguccGCCGgGGCc -3' miRNA: 3'- gCCgCCGaGGUC-GGCCCC------------UGGCgCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 39189 | 0.68 | 0.362965 |
Target: 5'- gGGCGGCggCCuugucuGCguucuUGGGGGCCG-GGCc -3' miRNA: 3'- gCCGCCGa-GGu-----CG-----GCCCCUGGCgCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 42006 | 0.68 | 0.362965 |
Target: 5'- gGGCuGCUCCgugcuGGCCGcGGGGuuGgGGUc -3' miRNA: 3'- gCCGcCGAGG-----UCGGC-CCCUggCgCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 102255 | 0.68 | 0.362965 |
Target: 5'- -uGUGGCcCCGGCUGaGGAaCGCGGCg -3' miRNA: 3'- gcCGCCGaGGUCGGCcCCUgGCGCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 2942 | 0.68 | 0.360751 |
Target: 5'- gGGCGGCcgggCCgGGCCGGGacucuugcgcuugcGccccucCCGCGGCg -3' miRNA: 3'- gCCGCCGa---GG-UCGGCCC--------------Cu-----GGCGCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 103816 | 0.68 | 0.358546 |
Target: 5'- gCGGCGGCgacgggcucgcugggUCCuaGGCUcaauGGGGACCGUauacguggacaGGCu -3' miRNA: 3'- -GCCGCCG---------------AGG--UCGG----CCCCUGGCG-----------CCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 103919 | 0.68 | 0.355622 |
Target: 5'- -uGCGGgaCgAGCCGGGucaCGCGGCu -3' miRNA: 3'- gcCGCCgaGgUCGGCCCcugGCGCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 34316 | 0.68 | 0.354893 |
Target: 5'- gGGCGGCgcgCCGGaCGGGGcGCUGgagauaaCGGCc -3' miRNA: 3'- gCCGCCGa--GGUCgGCCCC-UGGC-------GCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 3002 | 0.68 | 0.348384 |
Target: 5'- gCGGCGGCcgCCAGCgcguCGGcggcguccGGugCGCuGGCc -3' miRNA: 3'- -GCCGCCGa-GGUCG----GCC--------CCugGCG-CCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 2218 | 0.68 | 0.347667 |
Target: 5'- aGGCGGCcgugUCCggcccgcacAGCCGGuuggccaGGGCCGCcagcaGGCa -3' miRNA: 3'- gCCGCCG----AGG---------UCGGCC-------CCUGGCG-----CCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 95287 | 0.68 | 0.341253 |
Target: 5'- uGGCGcGCaUggGGgCGGGGGgCGCGGCg -3' miRNA: 3'- gCCGC-CG-AggUCgGCCCCUgGCGCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 65796 | 0.68 | 0.337025 |
Target: 5'- uCGGCGGgUCCGGCgaguggUGGGGucgagauucgacaagGCCGCuGCc -3' miRNA: 3'- -GCCGCCgAGGUCG------GCCCC---------------UGGCGcCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 24155 | 0.68 | 0.334227 |
Target: 5'- gGGCuGCUcgCCAgcGCCGGcGACCGgCGGCu -3' miRNA: 3'- gCCGcCGA--GGU--CGGCCcCUGGC-GCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home