miRNA display CGI


Results 81 - 100 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5965 3' -66.7 NC_001806.1 + 32954 0.68 0.362965
Target:  5'- uGG-GGCcCCGGgCCGGGGccccuuggguccGCCGgGGCc -3'
miRNA:   3'- gCCgCCGaGGUC-GGCCCC------------UGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 33108 0.73 0.167353
Target:  5'- gCGaGCGGgUCCGGaCGGGGcccggaccGCCGCGGUc -3'
miRNA:   3'- -GC-CGCCgAGGUCgGCCCC--------UGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 33348 0.71 0.24156
Target:  5'- uGGCcGCcCCGGCUgcaGGGGggcccggagaGCCGCGGCa -3'
miRNA:   3'- gCCGcCGaGGUCGG---CCCC----------UGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 33758 0.72 0.206179
Target:  5'- uCGGCGGC---GGCUGcGGcGGCUGCGGCg -3'
miRNA:   3'- -GCCGCCGaggUCGGC-CC-CUGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 33795 0.67 0.425385
Target:  5'- uCGGUcucGGUagCCGGCCGGcggguGGACuCGCGGg -3'
miRNA:   3'- -GCCG---CCGa-GGUCGGCC-----CCUG-GCGCCg -5'
5965 3' -66.7 NC_001806.1 + 34316 0.68 0.354893
Target:  5'- gGGCGGCgcgCCGGaCGGGGcGCUGgagauaaCGGCc -3'
miRNA:   3'- gCCGCCGa--GGUCgGCCCC-UGGC-------GCCG- -5'
5965 3' -66.7 NC_001806.1 + 34399 0.73 0.179508
Target:  5'- gGGCGGCgguggCCgGGCCGGgccGGGCCG-GGCc -3'
miRNA:   3'- gCCGCCGa----GG-UCGGCC---CCUGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 37764 0.73 0.159289
Target:  5'- uCGGCGGCgggcgccuuucgcUCCggGGCCGGGGcgcggggguCCGCGGg -3'
miRNA:   3'- -GCCGCCG-------------AGG--UCGGCCCCu--------GGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 37989 0.69 0.300698
Target:  5'- uGGgGGCacgCCGGCgGGGGuCCGacaaaccauCGGCa -3'
miRNA:   3'- gCCgCCGa--GGUCGgCCCCuGGC---------GCCG- -5'
5965 3' -66.7 NC_001806.1 + 38395 0.66 0.431145
Target:  5'- gCGGCGGCUcuccgCCGGCuCGGGGGgguccucguccagaUCGCuGUc -3'
miRNA:   3'- -GCCGCCGA-----GGUCG-GCCCCU--------------GGCGcCG- -5'
5965 3' -66.7 NC_001806.1 + 39189 0.68 0.362965
Target:  5'- gGGCGGCggCCuugucuGCguucuUGGGGGCCG-GGCc -3'
miRNA:   3'- gCCGCCGa-GGu-----CG-----GCCCCUGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 40917 0.68 0.37342
Target:  5'- aCGGCgaauccguuucgcgaGGUUCC-GCCGuGGGGCCgacuucGUGGCa -3'
miRNA:   3'- -GCCG---------------CCGAGGuCGGC-CCCUGG------CGCCG- -5'
5965 3' -66.7 NC_001806.1 + 41692 0.66 0.433627
Target:  5'- gGGCGGCgugCCGcccGCCGuguccuccccGGGACUgGCGGg -3'
miRNA:   3'- gCCGCCGa--GGU---CGGC----------CCCUGG-CGCCg -5'
5965 3' -66.7 NC_001806.1 + 42006 0.68 0.362965
Target:  5'- gGGCuGCUCCgugcuGGCCGcGGGGuuGgGGUc -3'
miRNA:   3'- gCCGcCGAGG-----UCGGC-CCCUggCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 42637 0.71 0.24156
Target:  5'- gCGGCGGCgucgcgUCCGGUgCGGGGGCU--GGCg -3'
miRNA:   3'- -GCCGCCG------AGGUCG-GCCCCUGGcgCCG- -5'
5965 3' -66.7 NC_001806.1 + 42740 0.67 0.400438
Target:  5'- uGGCGGCgauguggUCCGGUuguagCGGGGucCCGUGcGCc -3'
miRNA:   3'- gCCGCCG-------AGGUCG-----GCCCCu-GGCGC-CG- -5'
5965 3' -66.7 NC_001806.1 + 43277 0.67 0.417236
Target:  5'- gCGGCcGUUCC-GCCcucggaGGcGGAgCCGCGGCu -3'
miRNA:   3'- -GCCGcCGAGGuCGG------CC-CCU-GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 43713 0.66 0.458899
Target:  5'- cCGGgGGaacCCGGUCGGGGgggauuggggugACCGaGGCg -3'
miRNA:   3'- -GCCgCCga-GGUCGGCCCC------------UGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 44620 0.66 0.441962
Target:  5'- cCGGCGucaGCUcgCCGGCauagaCGaGGGACCGCccucGGCg -3'
miRNA:   3'- -GCCGC---CGA--GGUCG-----GC-CCCUGGCG----CCG- -5'
5965 3' -66.7 NC_001806.1 + 45284 0.66 0.441962
Target:  5'- gCGGCGGgagacgcgggCCcGCgCGGGGAgCCGCccGGCg -3'
miRNA:   3'- -GCCGCCga--------GGuCG-GCCCCU-GGCG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.