miRNA display CGI


Results 101 - 120 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5965 3' -66.7 NC_001806.1 + 45328 0.66 0.433627
Target:  5'- gGGCgGGCgcgaUgGGaUCGGGGGCgCGCGGUg -3'
miRNA:   3'- gCCG-CCGa---GgUC-GGCCCCUG-GCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 46093 0.74 0.141823
Target:  5'- gGGCGGUuuugUCCGGCCcGGGGCCugcGCGGg -3'
miRNA:   3'- gCCGCCG----AGGUCGGcCCCUGG---CGCCg -5'
5965 3' -66.7 NC_001806.1 + 46220 0.69 0.320495
Target:  5'- -cGCGGCcCCGGCgGcGGaGAccacCCGCGGCa -3'
miRNA:   3'- gcCGCCGaGGUCGgC-CC-CU----GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 46468 0.67 0.385617
Target:  5'- uGGCGGCggUCCAGCuCuGGGACauguCGCGuccGCg -3'
miRNA:   3'- gCCGCCG--AGGUCG-GcCCCUG----GCGC---CG- -5'
5965 3' -66.7 NC_001806.1 + 48886 0.74 0.145239
Target:  5'- aGcGCGGgaCCguuucccauuuGGCCGGGGGCUGgGGCg -3'
miRNA:   3'- gC-CGCCgaGG-----------UCGGCCCCUGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 49574 0.72 0.18373
Target:  5'- cCGGaaGCcgUCgGGCCGGaGGACgGCGGCg -3'
miRNA:   3'- -GCCgcCG--AGgUCGGCC-CCUGgCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 50080 0.76 0.103667
Target:  5'- aCGGCGuuGCgUCCcGUCGGGG-CCGCGGCc -3'
miRNA:   3'- -GCCGC--CG-AGGuCGGCCCCuGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 50683 0.66 0.441962
Target:  5'- gCGGCGGCcacgcgcgccauUCUGGCCGccGGGCUcguccugcaGCGGCu -3'
miRNA:   3'- -GCCGCCG------------AGGUCGGCc-CCUGG---------CGCCG- -5'
5965 3' -66.7 NC_001806.1 + 51025 0.69 0.288033
Target:  5'- gCGGCGGgUCCGuGuuGGGc-CCGCGGg -3'
miRNA:   3'- -GCCGCCgAGGU-CggCCCcuGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 51388 0.7 0.269236
Target:  5'- cCGGaggGGCUCCuuagcgcGGCCGuGGGcGCCuuGCGGCa -3'
miRNA:   3'- -GCCg--CCGAGG-------UCGGC-CCC-UGG--CGCCG- -5'
5965 3' -66.7 NC_001806.1 + 52610 0.66 0.441962
Target:  5'- gGGUGGgaCCuGUCGGGaaaagauucagcGGgCGCGGCg -3'
miRNA:   3'- gCCGCCgaGGuCGGCCC------------CUgGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 53864 0.67 0.412393
Target:  5'- aCGGCGGCcagcuguuuggcagCC-GCgCGGGGaucagggucGCCGgGGCg -3'
miRNA:   3'- -GCCGCCGa-------------GGuCG-GCCCC---------UGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 56657 0.67 0.42867
Target:  5'- cCGGCGGC-CCgugggaucguuggggGGUCgggGGGGACgGgGGCc -3'
miRNA:   3'- -GCCGCCGaGG---------------UCGG---CCCCUGgCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 56813 0.71 0.230963
Target:  5'- uGGCGGUggucgcccccgggCCcgccaacaccgccgcGGCCaGGGcGGCCGCGGCg -3'
miRNA:   3'- gCCGCCGa------------GG---------------UCGG-CCC-CUGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 57034 0.75 0.12283
Target:  5'- gGGUGGC-CgGGCCcGGGGCCGgGGCc -3'
miRNA:   3'- gCCGCCGaGgUCGGcCCCUGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 58182 0.69 0.300698
Target:  5'- uGGCGGUgacgCaCAGaCUGGGGACgGgGGUc -3'
miRNA:   3'- gCCGCCGa---G-GUC-GGCCCCUGgCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 59977 0.66 0.450387
Target:  5'- gGcGCGGCaccucUCUGGCCucGGGGACC-CGGg -3'
miRNA:   3'- gC-CGCCG-----AGGUCGG--CCCCUGGcGCCg -5'
5965 3' -66.7 NC_001806.1 + 64954 0.73 0.167353
Target:  5'- cCGGCgucGGCgCCcgGGCCGGGGGucCCGgGGCa -3'
miRNA:   3'- -GCCG---CCGaGG--UCGGCCCCU--GGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 65650 0.73 0.167353
Target:  5'- cCGGCGGcCUCCcccuggguGGCUGcgcuGGGGCCGcCGGCc -3'
miRNA:   3'- -GCCGCC-GAGG--------UCGGC----CCCUGGC-GCCG- -5'
5965 3' -66.7 NC_001806.1 + 65796 0.68 0.337025
Target:  5'- uCGGCGGgUCCGGCgaguggUGGGGucgagauucgacaagGCCGCuGCc -3'
miRNA:   3'- -GCCGCCgAGGUCG------GCCCC---------------UGGCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.