miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5965 3' -66.7 NC_001806.1 + 121412 0.67 0.417236
Target:  5'- gGGCGcGUgcugcgCCuugGGCCcGGGGGCCugGUGGCa -3'
miRNA:   3'- gCCGC-CGa-----GG---UCGG-CCCCUGG--CGCCG- -5'
5965 3' -66.7 NC_001806.1 + 120863 0.69 0.323208
Target:  5'- cCGGCGGCcCCuGgcgccgccuggucccCCGGGGACCuugcccCGGCc -3'
miRNA:   3'- -GCCGCCGaGGuC---------------GGCCCCUGGc-----GCCG- -5'
5965 3' -66.7 NC_001806.1 + 120320 0.66 0.433627
Target:  5'- uGGgGGgaCggggCGGUCGGGGGCgGCGGg -3'
miRNA:   3'- gCCgCCgaG----GUCGGCCCCUGgCGCCg -5'
5965 3' -66.7 NC_001806.1 + 119751 0.7 0.258212
Target:  5'- cCGGCGGCgaCGGCCGGacuGGCUGUGGa -3'
miRNA:   3'- -GCCGCCGagGUCGGCCc--CUGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 119592 0.71 0.235683
Target:  5'- uGGCGGgUCUggAGCCccccggcGGGGGCCGCuuuguGGCc -3'
miRNA:   3'- gCCGCCgAGG--UCGG-------CCCCUGGCG-----CCG- -5'
5965 3' -66.7 NC_001806.1 + 119188 0.66 0.441962
Target:  5'- uGGCGccgccGCcccgCCGGCCGcgaaGGaGGCUGCGGCc -3'
miRNA:   3'- gCCGC-----CGa---GGUCGGC----CC-CUGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 115090 0.68 0.33353
Target:  5'- gGGcCGGC-CCAGCCcguccccguguucGGGuGcgcccagguGCCGCGGCg -3'
miRNA:   3'- gCC-GCCGaGGUCGG-------------CCC-C---------UGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 113382 0.67 0.401228
Target:  5'- cCGGCGGCguUCCGGgacgcCCGGGGccuggaGCUGgGGg -3'
miRNA:   3'- -GCCGCCG--AGGUC-----GGCCCC------UGGCgCCg -5'
5965 3' -66.7 NC_001806.1 + 113092 0.71 0.215805
Target:  5'- uGGCGGCcCCGGCCGGcc-CCGCcGCa -3'
miRNA:   3'- gCCGCCGaGGUCGGCCccuGGCGcCG- -5'
5965 3' -66.7 NC_001806.1 + 112328 0.71 0.220761
Target:  5'- aGGCGGg-CCAccGCCGGGaGGCCGUcgaGGCc -3'
miRNA:   3'- gCCGCCgaGGU--CGGCCC-CUGGCG---CCG- -5'
5965 3' -66.7 NC_001806.1 + 107015 0.66 0.476175
Target:  5'- uCGcGCGcGCUugCCGGguuggccgcCCGcGGGGCCGCGGg -3'
miRNA:   3'- -GC-CGC-CGA--GGUC---------GGC-CCCUGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 104682 0.72 0.206179
Target:  5'- gGGUGaGauaUCGGCCGGGGA-CGCGGCg -3'
miRNA:   3'- gCCGC-Cga-GGUCGGCCCCUgGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 103919 0.68 0.355622
Target:  5'- -uGCGGgaCgAGCCGGGucaCGCGGCu -3'
miRNA:   3'- gcCGCCgaGgUCGGCCCcugGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 103816 0.68 0.358546
Target:  5'- gCGGCGGCgacgggcucgcugggUCCuaGGCUcaauGGGGACCGUauacguggacaGGCu -3'
miRNA:   3'- -GCCGCCG---------------AGG--UCGG----CCCCUGGCG-----------CCG- -5'
5965 3' -66.7 NC_001806.1 + 103506 0.68 0.37342
Target:  5'- gGGUGGCUCCcgccggauccaaaugAGUcuucggaccucgCGGGGGCCGCuuaaGCg -3'
miRNA:   3'- gCCGCCGAGG---------------UCG------------GCCCCUGGCGc---CG- -5'
5965 3' -66.7 NC_001806.1 + 102255 0.68 0.362965
Target:  5'- -uGUGGCcCCGGCUGaGGAaCGCGGCg -3'
miRNA:   3'- gcCGCCGaGGUCGGCcCCUgGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 101003 0.69 0.300698
Target:  5'- aGGC-GCUCCucCCGGGaGAgcggcggcCCGCGGCg -3'
miRNA:   3'- gCCGcCGAGGucGGCCC-CU--------GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 100374 0.72 0.192439
Target:  5'- aGGUaGCUCCcgucgccgggcGGCgCGGGGGCCGgGGUg -3'
miRNA:   3'- gCCGcCGAGG-----------UCG-GCCCCUGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 100308 0.66 0.458899
Target:  5'- -uGCGGCUggGGuuGGGG--CGCGGCa -3'
miRNA:   3'- gcCGCCGAggUCggCCCCugGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 100107 0.69 0.288033
Target:  5'- gCGGcCGGCUgaccgCCcGCCuGGcGGuCCGCGGCu -3'
miRNA:   3'- -GCC-GCCGA-----GGuCGG-CC-CCuGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.