miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5965 3' -66.7 NC_001806.1 + 99945 0.68 0.370412
Target:  5'- uGGCGGg-CCGcgcGCCGGGagucGACCccgcGCGGCg -3'
miRNA:   3'- gCCGCCgaGGU---CGGCCC----CUGG----CGCCG- -5'
5965 3' -66.7 NC_001806.1 + 96456 0.79 0.058305
Target:  5'- uCGGCGGCUCCGaguucccccggcacGCCuGGGG-UCGCGGCc -3'
miRNA:   3'- -GCCGCCGAGGU--------------CGG-CCCCuGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 95533 0.66 0.458899
Target:  5'- -aGCGGUcguuggCCAGCCuGGGGcgcugcguCCGCGaGCa -3'
miRNA:   3'- gcCGCCGa-----GGUCGG-CCCCu-------GGCGC-CG- -5'
5965 3' -66.7 NC_001806.1 + 95327 0.71 0.24156
Target:  5'- gGGCGGCgCgGGCCccgacgacgacGGGGACCGUGucGCc -3'
miRNA:   3'- gCCGCCGaGgUCGG-----------CCCCUGGCGC--CG- -5'
5965 3' -66.7 NC_001806.1 + 95287 0.68 0.341253
Target:  5'- uGGCGcGCaUggGGgCGGGGGgCGCGGCg -3'
miRNA:   3'- gCCGC-CG-AggUCgGCCCCUgGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 94725 0.68 0.327308
Target:  5'- gCGGCGGUaCCugccccacgccGCCGGGcugucggacgccGACCGCGcGCg -3'
miRNA:   3'- -GCCGCCGaGGu----------CGGCCC------------CUGGCGC-CG- -5'
5965 3' -66.7 NC_001806.1 + 94280 0.69 0.294313
Target:  5'- gCGaGCGGCUCCugggcAGCCuGGagacguucgcGACCGCGGg -3'
miRNA:   3'- -GC-CGCCGAGG-----UCGGcCC----------CUGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 93873 0.67 0.409183
Target:  5'- --cCGGCUugCCGGUCGGcGGGcCCGCGGg -3'
miRNA:   3'- gccGCCGA--GGUCGGCC-CCU-GGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 93585 0.69 0.307191
Target:  5'- uCGGCGGC-CCgggGGCCccGGGACCGgcauuugcCGGCc -3'
miRNA:   3'- -GCCGCCGaGG---UCGGc-CCCUGGC--------GCCG- -5'
5965 3' -66.7 NC_001806.1 + 92928 0.74 0.141823
Target:  5'- gGGCGGg-CCuggaGGCCGGGGcCCGCGcGCu -3'
miRNA:   3'- gCCGCCgaGG----UCGGCCCCuGGCGC-CG- -5'
5965 3' -66.7 NC_001806.1 + 90318 0.66 0.433627
Target:  5'- uGGUcgugGGUUCUcgcacgacggGGCuCGGGGguACCGCGGUg -3'
miRNA:   3'- gCCG----CCGAGG----------UCG-GCCCC--UGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 89569 0.73 0.167353
Target:  5'- gCGuCGGC-CCGGCCGGccgggcuuauGGACCGcCGGCg -3'
miRNA:   3'- -GCcGCCGaGGUCGGCC----------CCUGGC-GCCG- -5'
5965 3' -66.7 NC_001806.1 + 89535 0.69 0.300698
Target:  5'- uGcGCGGCgccCCGGCCGGcGGCC-CGGUu -3'
miRNA:   3'- gC-CGCCGa--GGUCGGCCcCUGGcGCCG- -5'
5965 3' -66.7 NC_001806.1 + 89265 0.65 0.482298
Target:  5'- cCGGCuGGCUCCgcgagGGCCGGcGGGCgcaaaaaacccggaCGCcGCc -3'
miRNA:   3'- -GCCG-CCGAGG-----UCGGCC-CCUG--------------GCGcCG- -5'
5965 3' -66.7 NC_001806.1 + 87669 0.66 0.476175
Target:  5'- cCGGCGGCguagUAGgCGGGGAugUCGCGa- -3'
miRNA:   3'- -GCCGCCGag--GUCgGCCCCU--GGCGCcg -5'
5965 3' -66.7 NC_001806.1 + 86071 0.7 0.258212
Target:  5'- gCGGCGGCgUCUAGCuCGcGGAggGCGGCc -3'
miRNA:   3'- -GCCGCCG-AGGUCG-GCcCCUggCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 86003 0.74 0.14873
Target:  5'- aCGGCGuCUCCcgggggcgcuuGGCCGGGGagggcaggGCCGCGGg -3'
miRNA:   3'- -GCCGCcGAGG-----------UCGGCCCC--------UGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 84823 0.72 0.18373
Target:  5'- -cGCGGCUCCGGCCcGGGcCCuaucaCGGCa -3'
miRNA:   3'- gcCGCCGAGGUCGGcCCCuGGc----GCCG- -5'
5965 3' -66.7 NC_001806.1 + 83962 0.69 0.307191
Target:  5'- aCGGgGaaUUCGagacggucGCCGGGGACCGCGaGCc -3'
miRNA:   3'- -GCCgCcgAGGU--------CGGCCCCUGGCGC-CG- -5'
5965 3' -66.7 NC_001806.1 + 82720 0.67 0.401228
Target:  5'- -cGCGGUgUCCGGgguCUGcGGGGCgGCGGCg -3'
miRNA:   3'- gcCGCCG-AGGUC---GGC-CCCUGgCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.