miRNA display CGI


Results 81 - 100 of 215 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5965 3' -66.7 NC_001806.1 + 79143 0.71 0.238339
Target:  5'- gGGCGGCcguucgacgccucccUCCuGUCGGGGGagcuauucCCGgGGCa -3'
miRNA:   3'- gCCGCCG---------------AGGuCGGCCCCU--------GGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 77259 0.68 0.326622
Target:  5'- uGGCGGaauUCgacgcggUGGCCGGGGACCuggccccauggGCGGUg -3'
miRNA:   3'- gCCGCCg--AG-------GUCGGCCCCUGG-----------CGCCG- -5'
5965 3' -66.7 NC_001806.1 + 77113 0.66 0.467496
Target:  5'- gGGCGccaagaGCgccgagCgGGCCGGGG-CCGUGGa -3'
miRNA:   3'- gCCGC------CGa-----GgUCGGCCCCuGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 76639 0.68 0.362965
Target:  5'- aGGUGGUcgCCGucCCGGcGACCGUGGCc -3'
miRNA:   3'- gCCGCCGa-GGUc-GGCCcCUGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 76540 0.66 0.464908
Target:  5'- cCGaGCGGgUCaCGGCgGGGcugcgggaggugcuGGCCGCGcGCg -3'
miRNA:   3'- -GC-CGCCgAG-GUCGgCCC--------------CUGGCGC-CG- -5'
5965 3' -66.7 NC_001806.1 + 75984 0.67 0.393372
Target:  5'- aGcGCGGC-CU--UCGGGG-CCGCGGCc -3'
miRNA:   3'- gC-CGCCGaGGucGGCCCCuGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 74950 0.71 0.235683
Target:  5'- aCGGCGGCgcugCgGGCggacaugUGGGGGCUGCuggGGCa -3'
miRNA:   3'- -GCCGCCGa---GgUCG-------GCCCCUGGCG---CCG- -5'
5965 3' -66.7 NC_001806.1 + 73974 0.68 0.334227
Target:  5'- uCGGCGuaaugcccGCcCCGGCCGGGGcggccCCGCagggGGCu -3'
miRNA:   3'- -GCCGC--------CGaGGUCGGCCCCu----GGCG----CCG- -5'
5965 3' -66.7 NC_001806.1 + 72387 0.69 0.307191
Target:  5'- -cGCGGCUCCuGCgGacuugacGGCCGCGGCu -3'
miRNA:   3'- gcCGCCGAGGuCGgCcc-----CUGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 72068 0.71 0.225813
Target:  5'- aGGUgGGCUUCu-UCGGGGAgcCCGCGGCg -3'
miRNA:   3'- gCCG-CCGAGGucGGCCCCU--GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 71350 0.67 0.401228
Target:  5'- gGGCacGGC-CCAcGCCaGGcGGACCGCgagggGGCg -3'
miRNA:   3'- gCCG--CCGaGGU-CGG-CC-CCUGGCG-----CCG- -5'
5965 3' -66.7 NC_001806.1 + 70855 0.69 0.300055
Target:  5'- -cGCGGCg-CGGCCGcGGGAcccgagcCCGUGGCc -3'
miRNA:   3'- gcCGCCGagGUCGGC-CCCU-------GGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 69594 0.68 0.369663
Target:  5'- gGGCGGCUCUgcgaggcggucGGCCugucgGGGGGCguucuaagccagaCGCuGGCg -3'
miRNA:   3'- gCCGCCGAGG-----------UCGG-----CCCCUG-------------GCG-CCG- -5'
5965 3' -66.7 NC_001806.1 + 66816 0.67 0.417236
Target:  5'- cCGaGCGGggCCGGcCCGGGuGGCCgGUGuGCg -3'
miRNA:   3'- -GC-CGCCgaGGUC-GGCCC-CUGG-CGC-CG- -5'
5965 3' -66.7 NC_001806.1 + 66642 0.7 0.25256
Target:  5'- gGGcCGGCUCCAacccGCgCGGGGGgaGCuGGCu -3'
miRNA:   3'- gCC-GCCGAGGU----CG-GCCCCUggCG-CCG- -5'
5965 3' -66.7 NC_001806.1 + 65796 0.68 0.337025
Target:  5'- uCGGCGGgUCCGGCgaguggUGGGGucgagauucgacaagGCCGCuGCc -3'
miRNA:   3'- -GCCGCCgAGGUCG------GCCCC---------------UGGCGcCG- -5'
5965 3' -66.7 NC_001806.1 + 65650 0.73 0.167353
Target:  5'- cCGGCGGcCUCCcccuggguGGCUGcgcuGGGGCCGcCGGCc -3'
miRNA:   3'- -GCCGCC-GAGG--------UCGGC----CCCUGGC-GCCG- -5'
5965 3' -66.7 NC_001806.1 + 64954 0.73 0.167353
Target:  5'- cCGGCgucGGCgCCcgGGCCGGGGGucCCGgGGCa -3'
miRNA:   3'- -GCCG---CCGaGG--UCGGCCCCU--GGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 59977 0.66 0.450387
Target:  5'- gGcGCGGCaccucUCUGGCCucGGGGACC-CGGg -3'
miRNA:   3'- gC-CGCCG-----AGGUCGG--CCCCUGGcGCCg -5'
5965 3' -66.7 NC_001806.1 + 58182 0.69 0.300698
Target:  5'- uGGCGGUgacgCaCAGaCUGGGGACgGgGGUc -3'
miRNA:   3'- gCCGCCGa---G-GUC-GGCCCCUGgCgCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.