Results 101 - 120 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 24780 | 0.67 | 0.409183 |
Target: 5'- uGcGCGGCgacgacgaCGGcCCGGGGgcccuGCCGcCGGCg -3' miRNA: 3'- gC-CGCCGag------GUC-GGCCCC-----UGGC-GCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 147714 | 0.67 | 0.404398 |
Target: 5'- aGGCGGCgcUCgcacgcacggggccaCGGCCgcgcGGGGGCgCGCGGg -3' miRNA: 3'- gCCGCCG--AG---------------GUCGG----CCCCUG-GCGCCg -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 113382 | 0.67 | 0.401228 |
Target: 5'- cCGGCGGCguUCCGGgacgcCCGGGGccuggaGCUGgGGg -3' miRNA: 3'- -GCCGCCG--AGGUC-----GGCCCC------UGGCgCCg -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 126572 | 0.67 | 0.401228 |
Target: 5'- aGGCGGUgcUCC-GCCGcGGAUCG-GGCc -3' miRNA: 3'- gCCGCCG--AGGuCGGCcCCUGGCgCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 82720 | 0.67 | 0.401228 |
Target: 5'- -cGCGGUgUCCGGgguCUGcGGGGCgGCGGCg -3' miRNA: 3'- gcCGCCG-AGGUC---GGC-CCCUGgCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 142150 | 0.67 | 0.417236 |
Target: 5'- uGGCGGCgUCCcGUCGcGGGGugggguccgaCGUGGCg -3' miRNA: 3'- gCCGCCG-AGGuCGGC-CCCUg---------GCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 66816 | 0.67 | 0.417236 |
Target: 5'- cCGaGCGGggCCGGcCCGGGuGGCCgGUGuGCg -3' miRNA: 3'- -GC-CGCCgaGGUC-GGCCC-CUGG-CGC-CG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 45328 | 0.66 | 0.433627 |
Target: 5'- gGGCgGGCgcgaUgGGaUCGGGGGCgCGCGGUg -3' miRNA: 3'- gCCG-CCGa---GgUC-GGCCCCUG-GCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 41692 | 0.66 | 0.433627 |
Target: 5'- gGGCGGCgugCCGcccGCCGuguccuccccGGGACUgGCGGg -3' miRNA: 3'- gCCGCCGa--GGU---CGGC----------CCCUGG-CGCCg -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 24003 | 0.66 | 0.433627 |
Target: 5'- uGGCGGCccuggccaaCCGGCUGuGcGGGCCGgacaCGGCc -3' miRNA: 3'- gCCGCCGa--------GGUCGGC-C-CCUGGC----GCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 90318 | 0.66 | 0.433627 |
Target: 5'- uGGUcgugGGUUCUcgcacgacggGGCuCGGGGguACCGCGGUg -3' miRNA: 3'- gCCG----CCGAGG----------UCG-GCCCC--UGGCGCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 38395 | 0.66 | 0.431145 |
Target: 5'- gCGGCGGCUcuccgCCGGCuCGGGGGgguccucguccagaUCGCuGUc -3' miRNA: 3'- -GCCGCCGA-----GGUCG-GCCCCU--------------GGCGcCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 56657 | 0.67 | 0.42867 |
Target: 5'- cCGGCGGC-CCgugggaucguuggggGGUCgggGGGGACgGgGGCc -3' miRNA: 3'- -GCCGCCGaGG---------------UCGG---CCCCUGgCgCCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 150651 | 0.67 | 0.425385 |
Target: 5'- uCGGCGGacgCUgguuGGCCGGGccccGCCGCgcuGGCg -3' miRNA: 3'- -GCCGCCga-GG----UCGGCCCc---UGGCG---CCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 136676 | 0.67 | 0.425385 |
Target: 5'- cCGGCGaa-CCAGCCguuGGGGcugcagACCGCGGg -3' miRNA: 3'- -GCCGCcgaGGUCGG---CCCC------UGGCGCCg -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 33795 | 0.67 | 0.425385 |
Target: 5'- uCGGUcucGGUagCCGGCCGGcggguGGACuCGCGGg -3' miRNA: 3'- -GCCG---CCGa-GGUCGGCC-----CCUG-GCGCCg -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 20991 | 0.67 | 0.425385 |
Target: 5'- aCGGCGGgggUC-GUCGGGGuCCGUGGg -3' miRNA: 3'- -GCCGCCga-GGuCGGCCCCuGGCGCCg -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 143259 | 0.67 | 0.425385 |
Target: 5'- gGGgGGaugUgGGCgGGGGugCGCGGg -3' miRNA: 3'- gCCgCCga-GgUCGgCCCCugGCGCCg -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 23214 | 0.67 | 0.425385 |
Target: 5'- gCGGCGGCggCCAGCgcacCGGacGCCGCcgacgcgcuGGCg -3' miRNA: 3'- -GCCGCCGa-GGUCG----GCCccUGGCG---------CCG- -5' |
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5965 | 3' | -66.7 | NC_001806.1 | + | 4045 | 0.67 | 0.425385 |
Target: 5'- gCGGCGucGC-CCAGCuCGGGcgcccacacGGCCGCcggGGCg -3' miRNA: 3'- -GCCGC--CGaGGUCG-GCCC---------CUGGCG---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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