Results 41 - 60 of 215 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 24117 | 0.66 | 0.467496 |
Target: 5'- -cGCGGgaCCuggccuucGCCGGGG-CCGUGGa -3' miRNA: 3'- gcCGCCgaGGu-------CGGCCCCuGGCGCCg -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 148075 | 0.66 | 0.475304 |
Target: 5'- cCGuGUGGC-CCGaugggcGCCGaGGGgggcgcuguccgaGCCGCGGCc -3' miRNA: 3'- -GC-CGCCGaGGU------CGGC-CCC-------------UGGCGCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 107015 | 0.66 | 0.476175 |
Target: 5'- uCGcGCGcGCUugCCGGguuggccgcCCGcGGGGCCGCGGg -3' miRNA: 3'- -GC-CGC-CGA--GGUC---------GGC-CCCUGGCGCCg -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 147107 | 0.66 | 0.476175 |
Target: 5'- -cGCGGC-CCAGaagcagcgCGGGGGCCGagggaGGUu -3' miRNA: 3'- gcCGCCGaGGUCg-------GCCCCUGGCg----CCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 87669 | 0.66 | 0.476175 |
Target: 5'- cCGGCGGCguagUAGgCGGGGAugUCGCGa- -3' miRNA: 3'- -GCCGCCGag--GUCgGCCCCU--GGCGCcg -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 95533 | 0.66 | 0.458899 |
Target: 5'- -aGCGGUcguuggCCAGCCuGGGGcgcugcguCCGCGaGCa -3' miRNA: 3'- gcCGCCGa-----GGUCGG-CCCCu-------GGCGC-CG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 3334 | 0.66 | 0.458899 |
Target: 5'- nGGUccCUCCGGCCgcgGGGGGCUgGCGGg -3' miRNA: 3'- gCCGccGAGGUCGG---CCCCUGG-CGCCg -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 25937 | 0.66 | 0.441962 |
Target: 5'- gCGGCgGGCguggGGgCGGGG-CCGCGGg -3' miRNA: 3'- -GCCG-CCGagg-UCgGCCCCuGGCGCCg -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 137674 | 0.66 | 0.441962 |
Target: 5'- gCGGuUGGCcCCGGCCacccacGGGGcGCUGcCGGCc -3' miRNA: 3'- -GCC-GCCGaGGUCGG------CCCC-UGGC-GCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 52610 | 0.66 | 0.441962 |
Target: 5'- gGGUGGgaCCuGUCGGGaaaagauucagcGGgCGCGGCg -3' miRNA: 3'- gCCGCCgaGGuCGGCCC------------CUgGCGCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 119188 | 0.66 | 0.441962 |
Target: 5'- uGGCGccgccGCcccgCCGGCCGcgaaGGaGGCUGCGGCc -3' miRNA: 3'- gCCGC-----CGa---GGUCGGC----CC-CUGGCGCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 45284 | 0.66 | 0.441962 |
Target: 5'- gCGGCGGgagacgcgggCCcGCgCGGGGAgCCGCccGGCg -3' miRNA: 3'- -GCCGCCga--------GGuCG-GCCCCU-GGCG--CCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 50683 | 0.66 | 0.441962 |
Target: 5'- gCGGCGGCcacgcgcgccauUCUGGCCGccGGGCUcguccugcaGCGGCu -3' miRNA: 3'- -GCCGCCG------------AGGUCGGCc-CCUGG---------CGCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 44620 | 0.66 | 0.441962 |
Target: 5'- cCGGCGucaGCUcgCCGGCauagaCGaGGGACCGCccucGGCg -3' miRNA: 3'- -GCCGC---CGA--GGUCG-----GC-CCCUGGCG----CCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 147800 | 0.66 | 0.450387 |
Target: 5'- gGGCGGagcCUGGCaUGGGcGCCGCGGg -3' miRNA: 3'- gCCGCCga-GGUCG-GCCCcUGGCGCCg -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 9534 | 0.66 | 0.450387 |
Target: 5'- cCGGgGGggCCAGCCacGGGACC-UGGUc -3' miRNA: 3'- -GCCgCCgaGGUCGGc-CCCUGGcGCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 15167 | 0.66 | 0.450387 |
Target: 5'- aCGGgaaGGC-UgGGCCcGGGGACUGgGGUa -3' miRNA: 3'- -GCCg--CCGaGgUCGG-CCCCUGGCgCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 59977 | 0.66 | 0.450387 |
Target: 5'- gGcGCGGCaccucUCUGGCCucGGGGACC-CGGg -3' miRNA: 3'- gC-CGCCG-----AGGUCGG--CCCCUGGcGCCg -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 21975 | 0.66 | 0.450387 |
Target: 5'- cCGGCGGgUCgAGCUGGacGCCGacgcgaccucCGGCg -3' miRNA: 3'- -GCCGCCgAGgUCGGCCccUGGC----------GCCG- -5' |
|||||||
5965 | 3' | -66.7 | NC_001806.1 | + | 1499 | 0.66 | 0.455484 |
Target: 5'- gGGCgucgucgucgGGCUCCAGCagggCGcGGGcgcaaaagucccuCCGCGGCc -3' miRNA: 3'- gCCG----------CCGAGGUCG----GC-CCCu------------GGCGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home