miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5965 3' -66.7 NC_001806.1 + 151531 0.73 0.174963
Target:  5'- gGGaCGGCgCCcgugggcccgggcGGCCGGGGGCgGCGGg -3'
miRNA:   3'- gCC-GCCGaGG-------------UCGGCCCCUGgCGCCg -5'
5965 3' -66.7 NC_001806.1 + 151430 0.81 0.048078
Target:  5'- gCGGgGGCccaCCGGCgGGGGGCgGCGGCg -3'
miRNA:   3'- -GCCgCCGa--GGUCGgCCCCUGgCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 151323 0.73 0.159665
Target:  5'- uGGCgccGGCUCgGGCgGGGGGCUGUccGGCc -3'
miRNA:   3'- gCCG---CCGAGgUCGgCCCCUGGCG--CCG- -5'
5965 3' -66.7 NC_001806.1 + 151275 0.78 0.069929
Target:  5'- gGGCGGUgggggCCggGGCCgGGGGGCgGCGGCg -3'
miRNA:   3'- gCCGCCGa----GG--UCGG-CCCCUGgCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 150995 0.71 0.210945
Target:  5'- -cGCGGCgcgCCAGgCGGGcGGCCGaGGCc -3'
miRNA:   3'- gcCGCCGa--GGUCgGCCC-CUGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 150868 0.71 0.225813
Target:  5'- gGGcCGGCUCCgcgGGCCaGGGcCCG-GGCa -3'
miRNA:   3'- gCC-GCCGAGG---UCGGcCCCuGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 150651 0.67 0.425385
Target:  5'- uCGGCGGacgCUgguuGGCCGGGccccGCCGCgcuGGCg -3'
miRNA:   3'- -GCCGCCga-GG----UCGGCCCc---UGGCG---CCG- -5'
5965 3' -66.7 NC_001806.1 + 150111 0.75 0.119904
Target:  5'- gGGCGGCcCCGuccCCGGGGACCaaccCGGCg -3'
miRNA:   3'- gCCGCCGaGGUc--GGCCCCUGGc---GCCG- -5'
5965 3' -66.7 NC_001806.1 + 149805 0.71 0.24156
Target:  5'- gGGCGGC-CCucaGGCCGGcGGGuacucgcuCCGgGGCg -3'
miRNA:   3'- gCCGCCGaGG---UCGGCC-CCU--------GGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 148191 0.73 0.175372
Target:  5'- gCGG-GGCgUCCGGCgGGGGGCgGgCGGUa -3'
miRNA:   3'- -GCCgCCG-AGGUCGgCCCCUGgC-GCCG- -5'
5965 3' -66.7 NC_001806.1 + 148127 0.67 0.401228
Target:  5'- gGGgGGCUgcgugagacgcCCcGCCcgucacGGGGGgCGCGGCg -3'
miRNA:   3'- gCCgCCGA-----------GGuCGG------CCCCUgGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 148075 0.66 0.475304
Target:  5'- cCGuGUGGC-CCGaugggcGCCGaGGGgggcgcuguccgaGCCGCGGCc -3'
miRNA:   3'- -GC-CGCCGaGGU------CGGC-CCC-------------UGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 147800 0.66 0.450387
Target:  5'- gGGCGGagcCUGGCaUGGGcGCCGCGGg -3'
miRNA:   3'- gCCGCCga-GGUCG-GCCCcUGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 147714 0.67 0.404398
Target:  5'- aGGCGGCgcUCgcacgcacggggccaCGGCCgcgcGGGGGCgCGCGGg -3'
miRNA:   3'- gCCGCCG--AG---------------GUCGG----CCCCUG-GCGCCg -5'
5965 3' -66.7 NC_001806.1 + 147668 0.84 0.027579
Target:  5'- gCGGcCGGCUCCGccCCGGGGGCCGgGGCg -3'
miRNA:   3'- -GCC-GCCGAGGUc-GGCCCCUGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 147495 0.73 0.159665
Target:  5'- gGGCGGCgCCGGagGGGGcggcGCCGCGGg -3'
miRNA:   3'- gCCGCCGaGGUCggCCCC----UGGCGCCg -5'
5965 3' -66.7 NC_001806.1 + 147225 0.7 0.247009
Target:  5'- aGGCGGCcCCcGCgGGGG-UCGgGGCc -3'
miRNA:   3'- gCCGCCGaGGuCGgCCCCuGGCgCCG- -5'
5965 3' -66.7 NC_001806.1 + 147107 0.66 0.476175
Target:  5'- -cGCGGC-CCAGaagcagcgCGGGGGCCGagggaGGUu -3'
miRNA:   3'- gcCGCCGaGGUCg-------GCCCCUGGCg----CCG- -5'
5965 3' -66.7 NC_001806.1 + 146842 1.09 0.00038
Target:  5'- gCGGCGGCUCCAGCCGGGGACCGCGGCc -3'
miRNA:   3'- -GCCGCCGAGGUCGGCCCCUGGCGCCG- -5'
5965 3' -66.7 NC_001806.1 + 146179 0.72 0.201507
Target:  5'- uCGGUGGUcaggCAGCCcGGG-CCGCGGCu -3'
miRNA:   3'- -GCCGCCGag--GUCGGcCCCuGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.