miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5965 5' -54.2 NC_001806.1 + 28237 0.66 0.962933
Target:  5'- gCGCCAUGUUgggggaccCCCGacccuuacaCUGGaaccggCCGCCa -3'
miRNA:   3'- aGCGGUACAAa-------GGGCa--------GACCa-----GGUGG- -5'
5965 5' -54.2 NC_001806.1 + 146916 0.66 0.959413
Target:  5'- aCGCCccgAUGUUcCCCGUCUccauGUCCAg- -3'
miRNA:   3'- aGCGG---UACAAaGGGCAGAc---CAGGUgg -5'
5965 5' -54.2 NC_001806.1 + 129611 0.66 0.955669
Target:  5'- gCGCCGgugccUGUUUCUcccgCGUCUGGggaccgagcUCCugCa -3'
miRNA:   3'- aGCGGU-----ACAAAGG----GCAGACC---------AGGugG- -5'
5965 5' -54.2 NC_001806.1 + 96975 0.66 0.955669
Target:  5'- aCGCCAaGggggUCUGUC-GGUCCACg -3'
miRNA:   3'- aGCGGUaCaaa-GGGCAGaCCAGGUGg -5'
5965 5' -54.2 NC_001806.1 + 148072 0.66 0.951696
Target:  5'- cUGCCGUGUggCCCGa-UGGg-CGCCg -3'
miRNA:   3'- aGCGGUACAaaGGGCagACCagGUGG- -5'
5965 5' -54.2 NC_001806.1 + 135511 0.66 0.951696
Target:  5'- aUGUCAUaGUcggCCCGgagCaGGUCCGCCc -3'
miRNA:   3'- aGCGGUA-CAaa-GGGCa--GaCCAGGUGG- -5'
5965 5' -54.2 NC_001806.1 + 90254 0.66 0.947493
Target:  5'- gUCGCCGUGgcgCCC--CUGGUCguggGCCu -3'
miRNA:   3'- -AGCGGUACaaaGGGcaGACCAGg---UGG- -5'
5965 5' -54.2 NC_001806.1 + 93939 0.66 0.946624
Target:  5'- aCGCCggGUagcguacggaCCGcCUcGGUCCACCg -3'
miRNA:   3'- aGCGGuaCAaag-------GGCaGA-CCAGGUGG- -5'
5965 5' -54.2 NC_001806.1 + 99913 0.66 0.946186
Target:  5'- gCGCCGUGauggUCUCG-UUGGUCCcgggagaauggcggGCCg -3'
miRNA:   3'- aGCGGUACaa--AGGGCaGACCAGG--------------UGG- -5'
5965 5' -54.2 NC_001806.1 + 87442 0.67 0.943509
Target:  5'- aUCGCCccuggGUGUccggcagaauaaagCCCuUCUGGUCgGCCa -3'
miRNA:   3'- -AGCGG-----UACAaa------------GGGcAGACCAGgUGG- -5'
5965 5' -54.2 NC_001806.1 + 144758 0.67 0.943054
Target:  5'- gUCGCCGgaaUGUUUCguUCGUCU-GUCC-CCu -3'
miRNA:   3'- -AGCGGU---ACAAAG--GGCAGAcCAGGuGG- -5'
5965 5' -54.2 NC_001806.1 + 62198 0.67 0.938378
Target:  5'- aUCGCCAgGUccgccgUCgCGcUCUGGUCCguaaggGCCg -3'
miRNA:   3'- -AGCGGUaCAa-----AGgGC-AGACCAGG------UGG- -5'
5965 5' -54.2 NC_001806.1 + 90890 0.67 0.928308
Target:  5'- aCGCCGUGg--CCCGcgcGG-CCGCCc -3'
miRNA:   3'- aGCGGUACaaaGGGCagaCCaGGUGG- -5'
5965 5' -54.2 NC_001806.1 + 34567 0.67 0.922911
Target:  5'- cCGCCGgggagcGUUgUCgCCGUC-GGUCUGCCg -3'
miRNA:   3'- aGCGGUa-----CAA-AG-GGCAGaCCAGGUGG- -5'
5965 5' -54.2 NC_001806.1 + 68055 0.67 0.922911
Target:  5'- cCGCCcgG--UCUCGUCguUGGUCUACg -3'
miRNA:   3'- aGCGGuaCaaAGGGCAG--ACCAGGUGg -5'
5965 5' -54.2 NC_001806.1 + 114246 0.68 0.917274
Target:  5'- aCGCCAUGUUUCacaaCGggcgCgUGGUaguggacgggcCCGCCa -3'
miRNA:   3'- aGCGGUACAAAGg---GCa---G-ACCA-----------GGUGG- -5'
5965 5' -54.2 NC_001806.1 + 37916 0.68 0.911996
Target:  5'- cUCGCCAUGggggcgccggggCCGUCc-GUCCACCc -3'
miRNA:   3'- -AGCGGUACaaag--------GGCAGacCAGGUGG- -5'
5965 5' -54.2 NC_001806.1 + 51031 0.68 0.892346
Target:  5'- -gGuCCGUGUUgggCCCG-CgGGUCCGCg -3'
miRNA:   3'- agC-GGUACAAa--GGGCaGaCCAGGUGg -5'
5965 5' -54.2 NC_001806.1 + 19014 0.68 0.892346
Target:  5'- -gGCgCAUGUagCCCagGUCgggGGUCCAUCg -3'
miRNA:   3'- agCG-GUACAaaGGG--CAGa--CCAGGUGG- -5'
5965 5' -54.2 NC_001806.1 + 85444 0.69 0.885532
Target:  5'- aCGUCAUcUUUCCCGgcacGUCCGCCc -3'
miRNA:   3'- aGCGGUAcAAAGGGCagacCAGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.