miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5966 5' -66 NC_001806.1 + 73931 0.66 0.524249
Target:  5'- cUCGCUCGCGGGGucgacGCGGUCucacagcacgCCGGGc-- -3'
miRNA:   3'- -GGCGGGCGCCCC-----UGCCGG----------GGCCUuca -5'
5966 5' -66 NC_001806.1 + 2425 0.66 0.524249
Target:  5'- -gGCCCGaggcgcgcaGGGGgccaaagagGCGGCCCCcggcggccccguGGggGUg -3'
miRNA:   3'- ggCGGGCg--------CCCC---------UGCCGGGG------------CCuuCA- -5'
5966 5' -66 NC_001806.1 + 27090 0.66 0.524249
Target:  5'- -gGCCCGCGGaGcCGGCCCgGcGAAc- -3'
miRNA:   3'- ggCGGGCGCCcCuGCCGGGgC-CUUca -5'
5966 5' -66 NC_001806.1 + 33133 0.66 0.524249
Target:  5'- aCCGCCgCGguCGGGGGCcccucGUCCCGGGc-- -3'
miRNA:   3'- -GGCGG-GC--GCCCCUGc----CGGGGCCUuca -5'
5966 5' -66 NC_001806.1 + 48294 0.66 0.524249
Target:  5'- aCGCCCccgaagagGCGGGGcugGCGGCUCCGc---- -3'
miRNA:   3'- gGCGGG--------CGCCCC---UGCCGGGGCcuuca -5'
5966 5' -66 NC_001806.1 + 99730 0.66 0.506202
Target:  5'- gCGCUgugugGUGGGGggcgauacACGGCCuCCGGggGa -3'
miRNA:   3'- gGCGGg----CGCCCC--------UGCCGG-GGCCuuCa -5'
5966 5' -66 NC_001806.1 + 30255 0.66 0.506202
Target:  5'- gCCGCCUcCGGGGccCGGCCCCc----- -3'
miRNA:   3'- -GGCGGGcGCCCCu-GCCGGGGccuuca -5'
5966 5' -66 NC_001806.1 + 77937 0.66 0.479647
Target:  5'- -gGCCCaGCuggaauGGGGgggugacgcgGCGGCCCCGGGGc- -3'
miRNA:   3'- ggCGGG-CG------CCCC----------UGCCGGGGCCUUca -5'
5966 5' -66 NC_001806.1 + 93460 0.66 0.479647
Target:  5'- gUGgUCGaCGGacGCGGCCCUGGAGGUg -3'
miRNA:   3'- gGCgGGC-GCCccUGCCGGGGCCUUCA- -5'
5966 5' -66 NC_001806.1 + 115652 0.66 0.479647
Target:  5'- gUGCCCGCaacGGGGAa-GCCCacgcgCGGGAGa -3'
miRNA:   3'- gGCGGGCG---CCCCUgcCGGG-----GCCUUCa -5'
5966 5' -66 NC_001806.1 + 46189 0.66 0.483149
Target:  5'- cCCGaaCCCaGCGGGuGgcgacuaaggcccccGCGGCCCCGGcGGc -3'
miRNA:   3'- -GGC--GGG-CGCCC-C---------------UGCCGGGGCCuUCa -5'
5966 5' -66 NC_001806.1 + 93580 0.66 0.488425
Target:  5'- gCCGUUCgGCGGcccGGgGGCCCCGGGAc- -3'
miRNA:   3'- -GGCGGG-CGCCc--CUgCCGGGGCCUUca -5'
5966 5' -66 NC_001806.1 + 22571 0.66 0.497278
Target:  5'- -gGgCCGCGGGGA--GCCCCGGc--- -3'
miRNA:   3'- ggCgGGCGCCCCUgcCGGGGCCuuca -5'
5966 5' -66 NC_001806.1 + 132503 0.66 0.497278
Target:  5'- gCCGCCCcCGGGGcccUGGCCCCc----- -3'
miRNA:   3'- -GGCGGGcGCCCCu--GCCGGGGccuuca -5'
5966 5' -66 NC_001806.1 + 35122 0.66 0.497278
Target:  5'- gCGuCCCGUGGacGCGGCCCuCGGuuGg -3'
miRNA:   3'- gGC-GGGCGCCccUGCCGGG-GCCuuCa -5'
5966 5' -66 NC_001806.1 + 38802 0.66 0.497278
Target:  5'- uCCGCuuCCGCGGGGAccCGGg--CGGggGUg -3'
miRNA:   3'- -GGCG--GGCGCCCCU--GCCgggGCCuuCA- -5'
5966 5' -66 NC_001806.1 + 121523 0.66 0.497278
Target:  5'- -gGCCCGCcaucuGGGAUGGCuCCUGGccAGGa -3'
miRNA:   3'- ggCGGGCGc----CCCUGCCG-GGGCC--UUCa -5'
5966 5' -66 NC_001806.1 + 114071 0.66 0.497278
Target:  5'- cCCGCCuucuCGCGGGGccgcuGCuGCaCCgCGGggGUu -3'
miRNA:   3'- -GGCGG----GCGCCCC-----UGcCG-GG-GCCuuCA- -5'
5966 5' -66 NC_001806.1 + 11358 0.66 0.500839
Target:  5'- gCCGCCCcaGCGGGcuccgacucuucggcGAUGGCCgucaGGGAGg -3'
miRNA:   3'- -GGCGGG--CGCCC---------------CUGCCGGgg--CCUUCa -5'
5966 5' -66 NC_001806.1 + 119546 0.66 0.506202
Target:  5'- gCCGUCaGCGGGGGCG-CCauGGggGc -3'
miRNA:   3'- -GGCGGgCGCCCCUGCcGGggCCuuCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.