Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5966 | 5' | -66 | NC_001806.1 | + | 83253 | 0.73 | 0.18143 |
Target: 5'- -gGCCCGCGGGGggGCGGgCgaCGGAGGg -3' miRNA: 3'- ggCGGGCGCCCC--UGCCgGg-GCCUUCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 4333 | 0.73 | 0.185257 |
Target: 5'- aCCGCCgCGCGGGcccggcggcgcucGauGCGGCCCgCGGAGGc -3' miRNA: 3'- -GGCGG-GCGCCC-------------C--UGCCGGG-GCCUUCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 23586 | 0.73 | 0.185687 |
Target: 5'- gCGCCCGCGGccGCcGCCCUGGAGGc -3' miRNA: 3'- gGCGGGCGCCccUGcCGGGGCCUUCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 378 | 0.73 | 0.189593 |
Target: 5'- gCGCCCGCGGGG--GGCCCgGGcugccacAGGUg -3' miRNA: 3'- gGCGGGCGCCCCugCCGGGgCC-------UUCA- -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 2800 | 0.73 | 0.189593 |
Target: 5'- gCGCCgcgggcuggGCGGGGGCgggcucgGGCCCCGGggGc -3' miRNA: 3'- gGCGGg--------CGCCCCUG-------CCGGGGCCuuCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 54866 | 0.73 | 0.203139 |
Target: 5'- -gGUCCGCGGGGggaccuggccgccGCaGCCUCGGAGGUc -3' miRNA: 3'- ggCGGGCGCCCC-------------UGcCGGGGCCUUCA- -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 29115 | 0.73 | 0.203604 |
Target: 5'- gCCGCagggcguggaUGgGGGGGCGGUCUCGGggGg -3' miRNA: 3'- -GGCGg---------GCgCCCCUGCCGGGGCCuuCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 4175 | 0.73 | 0.203604 |
Target: 5'- cCCGCCCcggggGCGGGGGCccGGCgCCGGGc-- -3' miRNA: 3'- -GGCGGG-----CGCCCCUG--CCGgGGCCUuca -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 55526 | 0.72 | 0.212629 |
Target: 5'- -gGCCCGgGGGGuuuagugggGCGGCCCgacuuggCGGggGUg -3' miRNA: 3'- ggCGGGCgCCCC---------UGCCGGG-------GCCuuCA- -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 152088 | 0.72 | 0.213114 |
Target: 5'- gCGCCCGCGGGG--GGCCCgGGc--- -3' miRNA: 3'- gGCGGGCGCCCCugCCGGGgCCuuca -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 128047 | 0.72 | 0.213114 |
Target: 5'- aUGCCCGUGGcGGccACGGCCCCcagguGGggGc -3' miRNA: 3'- gGCGGGCGCC-CC--UGCCGGGG-----CCuuCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 147175 | 0.72 | 0.21801 |
Target: 5'- cCCGCCCgaggaggcggaaGCGGaGGaggacGCGGCCCCGGcGGc -3' miRNA: 3'- -GGCGGG------------CGCC-CC-----UGCCGGGGCCuUCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 30784 | 0.72 | 0.223002 |
Target: 5'- uCCGCCUccucggGCGGGGcCGucgguGCCCUGGGAGg -3' miRNA: 3'- -GGCGGG------CGCCCCuGC-----CGGGGCCUUCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 52933 | 0.72 | 0.228091 |
Target: 5'- uCgGCCacggguGUGGGGACccGCCCCGGAGGg -3' miRNA: 3'- -GgCGGg-----CGCCCCUGc-CGGGGCCUUCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 2667 | 0.72 | 0.232755 |
Target: 5'- gCGgCCGCGGGcGCcgccguguggcugGGCCCCGGggGc -3' miRNA: 3'- gGCgGGCGCCCcUG-------------CCGGGGCCuuCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 49153 | 0.72 | 0.233278 |
Target: 5'- cUCGCCCGUGGcGGACGaGCCagCGGgcGa -3' miRNA: 3'- -GGCGGGCGCC-CCUGC-CGGg-GCCuuCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 72491 | 0.71 | 0.243406 |
Target: 5'- aCCcCCUGCGGGGcgagaucGCGGgCCUGGggGa -3' miRNA: 3'- -GGcGGGCGCCCC-------UGCCgGGGCCuuCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 20319 | 0.71 | 0.243949 |
Target: 5'- cCCGCCCGCcggccaauggGGGGGCGGCaaggCGGgcGg -3' miRNA: 3'- -GGCGGGCG----------CCCCUGCCGgg--GCCuuCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 70153 | 0.71 | 0.249436 |
Target: 5'- aCCGgCCGCccGGGGCGGCCUCGGc--- -3' miRNA: 3'- -GGCgGGCGc-CCCUGCCGGGGCCuuca -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 150100 | 0.71 | 0.249436 |
Target: 5'- -gGCCCaccGCGGGG-CGGCCCCGuccccGggGa -3' miRNA: 3'- ggCGGG---CGCCCCuGCCGGGGC-----CuuCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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