Results 41 - 60 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5966 | 5' | -66 | NC_001806.1 | + | 21497 | 0.67 | 0.462329 |
Target: 5'- gCCGCCgGCGaccGGGcccCGGCCCggggccgcgaaCGGGAGg -3' miRNA: 3'- -GGCGGgCGC---CCCu--GCCGGG-----------GCCUUCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 41371 | 0.67 | 0.461471 |
Target: 5'- gCCGCCa--GGGGGCaucacggGGCCCUGGgcGc -3' miRNA: 3'- -GGCGGgcgCCCCUG-------CCGGGGCCuuCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 17580 | 0.67 | 0.453793 |
Target: 5'- cCUGUuuGCGGaGGACaGCCCCuuGGAGa- -3' miRNA: 3'- -GGCGggCGCC-CCUGcCGGGG--CCUUca -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 151451 | 0.67 | 0.445344 |
Target: 5'- gCGgCgGCGGGG-CGGCCgCGGgcGc -3' miRNA: 3'- gGCgGgCGCCCCuGCCGGgGCCuuCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 55778 | 0.67 | 0.445344 |
Target: 5'- aCCGCucCCGCGGugaucGugGGCCCggUGGAGGc -3' miRNA: 3'- -GGCG--GGCGCCc----CugCCGGG--GCCUUCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 21282 | 0.67 | 0.445344 |
Target: 5'- aCGCCCgGCGggacGGGAgGGCCCCcgcGGcGGg -3' miRNA: 3'- gGCGGG-CGC----CCCUgCCGGGG---CCuUCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 52877 | 0.67 | 0.436984 |
Target: 5'- aCCGCCgGCGGcGACGuGCCCCu----- -3' miRNA: 3'- -GGCGGgCGCCcCUGC-CGGGGccuuca -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 148387 | 0.67 | 0.436984 |
Target: 5'- cUCGUCCGU--GGugGGCUCCGGGugGGUg -3' miRNA: 3'- -GGCGGGCGccCCugCCGGGGCCU--UCA- -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 23318 | 0.67 | 0.436984 |
Target: 5'- gCCGCCCGgaGGcGGCGGCCCgCGacccccGAAGa -3' miRNA: 3'- -GGCGGGCg-CCcCUGCCGGG-GC------CUUCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 149779 | 0.67 | 0.432011 |
Target: 5'- gCGCCCgGCcccucaccucgcgcuGGGGGCGGCCCucaggcCGGcGGGUa -3' miRNA: 3'- gGCGGG-CG---------------CCCCUGCCGGG------GCC-UUCA- -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 22074 | 0.67 | 0.428715 |
Target: 5'- cCCGCCCcCGGGGcgggugcuguACGGCggCCUGGgcGa -3' miRNA: 3'- -GGCGGGcGCCCC----------UGCCG--GGGCCuuCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 44504 | 0.67 | 0.428715 |
Target: 5'- gCCGUuuGCcGGGACGGUgaCCGGgcGa -3' miRNA: 3'- -GGCGggCGcCCCUGCCGg-GGCCuuCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 57617 | 0.67 | 0.427072 |
Target: 5'- cCCGcCCCGUcaGGGGAauccaaaaccauaCGGgguuugggggcccCCCCGGAAGg -3' miRNA: 3'- -GGC-GGGCG--CCCCU-------------GCC-------------GGGGCCUUCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 3047 | 0.67 | 0.420538 |
Target: 5'- gCCGCCaGCaGGGGGCgcaGGCUCUGGuuGUc -3' miRNA: 3'- -GGCGGgCG-CCCCUG---CCGGGGCCuuCA- -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 143787 | 0.67 | 0.420538 |
Target: 5'- cCCGCgaCGgGGGGACGGaggggaCGGAGGg -3' miRNA: 3'- -GGCGg-GCgCCCCUGCCggg---GCCUUCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 6310 | 0.67 | 0.420538 |
Target: 5'- cCCGCCCaccccacccacGaaacacaGGGGACGcaCCCCGGggGc -3' miRNA: 3'- -GGCGGG-----------Cg------CCCCUGCc-GGGGCCuuCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 30733 | 0.68 | 0.412457 |
Target: 5'- aCC-CCCGCGGGGGCcGCCucuuccgccgCCGGGGc- -3' miRNA: 3'- -GGcGGGCGCCCCUGcCGG----------GGCCUUca -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 26695 | 0.68 | 0.412457 |
Target: 5'- aCCGCCC--GGcGugGGCCCgGGggGc -3' miRNA: 3'- -GGCGGGcgCCcCugCCGGGgCCuuCa -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 3129 | 0.68 | 0.412457 |
Target: 5'- cCCGCggcagCGCGGGGcccAgGGCCCCGGc--- -3' miRNA: 3'- -GGCGg----GCGCCCC---UgCCGGGGCCuuca -5' |
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5966 | 5' | -66 | NC_001806.1 | + | 148146 | 0.68 | 0.411654 |
Target: 5'- cCCGCCCGUcacgGGGGGCGcggcggcGCCUCugcguGGggGg -3' miRNA: 3'- -GGCGGGCG----CCCCUGC-------CGGGG-----CCuuCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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