Results 41 - 60 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5969 | 3' | -51 | NC_001806.1 | + | 20625 | 0.66 | 0.994234 |
Target: 5'- cGGGGccGGGGGUU--CGACCAAcGGg -3' miRNA: 3'- cCCUCuuUCCCCAGacGUUGGUUuCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 113394 | 0.66 | 0.994234 |
Target: 5'- cGGGAcgcccGGGGcCUGgAGCUggGGGu -3' miRNA: 3'- -CCCUcuuu-CCCCaGACgUUGGuuUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 30636 | 0.66 | 0.995036 |
Target: 5'- aGGGccGGGGGGG-C-GCGGCCAGGGu -3' miRNA: 3'- -CCCucUUUCCCCaGaCGUUGGUUUCc -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 99713 | 0.66 | 0.995036 |
Target: 5'- gGGGAGGAccguAGGGGgcgCUGUGuggUggGGGg -3' miRNA: 3'- -CCCUCUU----UCCCCa--GACGUug-GuuUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 109537 | 0.66 | 0.995036 |
Target: 5'- cGGGAGccGGGGGaggUGCGccuggGCCAGGGc -3' miRNA: 3'- -CCCUCuuUCCCCag-ACGU-----UGGUUUCc -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 51094 | 0.66 | 0.992319 |
Target: 5'- uGGGAGAcGAGGGGgccgccgccCUGCGGgCGcacgugucGGGGa -3' miRNA: 3'- -CCCUCU-UUCCCCa--------GACGUUgGU--------UUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 140444 | 0.66 | 0.992319 |
Target: 5'- uGGGGGggGGGcGGUUacuCGGCCcccGAGGc -3' miRNA: 3'- -CCCUCuuUCC-CCAGac-GUUGGu--UUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 57810 | 0.66 | 0.991188 |
Target: 5'- aGGGGGAcuGGa-UCUGCGGgCGGGGGu -3' miRNA: 3'- -CCCUCUuuCCccAGACGUUgGUUUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 151091 | 0.66 | 0.991188 |
Target: 5'- cGGGGGucgcGGGGGUCgcggggGUcGCgGGGGGc -3' miRNA: 3'- -CCCUCuu--UCCCCAGa-----CGuUGgUUUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 105120 | 0.66 | 0.991188 |
Target: 5'- cGGGAGGAuuGGGGaCaGCuuUCGGGGGc -3' miRNA: 3'- -CCCUCUUu-CCCCaGaCGuuGGUUUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 151274 | 0.66 | 0.991188 |
Target: 5'- cGGGcGguGGGGG-CcGgGGCCGGGGGg -3' miRNA: 3'- -CCCuCuuUCCCCaGaCgUUGGUUUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 25097 | 0.66 | 0.992319 |
Target: 5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3' miRNA: 3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 25131 | 0.66 | 0.992319 |
Target: 5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3' miRNA: 3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 25165 | 0.66 | 0.992319 |
Target: 5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3' miRNA: 3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 25199 | 0.66 | 0.992319 |
Target: 5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3' miRNA: 3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 25233 | 0.66 | 0.992319 |
Target: 5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3' miRNA: 3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 25267 | 0.66 | 0.992319 |
Target: 5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3' miRNA: 3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 25301 | 0.66 | 0.992319 |
Target: 5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3' miRNA: 3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 25335 | 0.66 | 0.992319 |
Target: 5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3' miRNA: 3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5' |
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5969 | 3' | -51 | NC_001806.1 | + | 25369 | 0.66 | 0.992319 |
Target: 5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3' miRNA: 3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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