Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5971 | 3' | -54 | NC_001806.1 | + | 119554 | 0.66 | 0.954112 |
Target: 5'- cGGG-GgcGCCAugGGGGCggcugacgcagauGCGGUGCu -3' miRNA: 3'- -UCCaCuuUGGUugUCUCG-------------UGCCGCGu -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 95641 | 0.66 | 0.950391 |
Target: 5'- cGGUc--GCCAACGGcuuugcGGCGCGcGCGCGc -3' miRNA: 3'- uCCAcuuUGGUUGUC------UCGUGC-CGCGU- -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 82722 | 0.66 | 0.946027 |
Target: 5'- cGGUGu--CCGgggucuGCGGGGCGgCGGCGUc -3' miRNA: 3'- uCCACuuuGGU------UGUCUCGU-GCCGCGu -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 19096 | 0.66 | 0.941418 |
Target: 5'- uGGGcuUGggGCCGACGGGGUggGG-GCc -3' miRNA: 3'- -UCC--ACuuUGGUUGUCUCGugCCgCGu -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 126142 | 0.66 | 0.936562 |
Target: 5'- cGGcGAGGCCGGCGccGAcaCGCGGCGCu -3' miRNA: 3'- uCCaCUUUGGUUGU--CUc-GUGCCGCGu -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 67239 | 0.66 | 0.936562 |
Target: 5'- cAGGUGAGGCagguCGGCGGGGUgccGCaGCGCc -3' miRNA: 3'- -UCCACUUUG----GUUGUCUCG---UGcCGCGu -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 71698 | 0.66 | 0.936562 |
Target: 5'- cGGGUcucuGGCCAGCAGGGCacauaugaucGCGG-GCAc -3' miRNA: 3'- -UCCAcu--UUGGUUGUCUCG----------UGCCgCGU- -5' |
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5971 | 3' | -54 | NC_001806.1 | + | 77376 | 0.66 | 0.954513 |
Target: 5'- cAGGccAGACgGGCGcGGGCGCGGCGg- -3' miRNA: 3'- -UCCacUUUGgUUGU-CUCGUGCCGCgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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