miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5971 3' -54 NC_001806.1 + 39750 0.67 0.902181
Target:  5'- cAGGUGGGACCuggaAGGGCACGacccuaccCGCGa -3'
miRNA:   3'- -UCCACUUUGGuug-UCUCGUGCc-------GCGU- -5'
5971 3' -54 NC_001806.1 + 36228 0.68 0.874369
Target:  5'- --cUGGAGCUGAUGGAGCGCaGGUGCu -3'
miRNA:   3'- uccACUUUGGUUGUCUCGUG-CCGCGu -5'
5971 3' -54 NC_001806.1 + 34300 0.7 0.79921
Target:  5'- gGGGUuu-AgCGGCGGGGgGCGGCGCGc -3'
miRNA:   3'- -UCCAcuuUgGUUGUCUCgUGCCGCGU- -5'
5971 3' -54 NC_001806.1 + 33281 0.67 0.930931
Target:  5'- cGGG-GAaaacgaaaaaacaGACCAGCGGccGGC-CGGCGCu -3'
miRNA:   3'- -UCCaCU-------------UUGGUUGUC--UCGuGCCGCGu -5'
5971 3' -54 NC_001806.1 + 31754 0.68 0.895585
Target:  5'- uGGUGuuAACC-ACAGAGCcGCGGCcCGg -3'
miRNA:   3'- uCCACu-UUGGuUGUCUCG-UGCCGcGU- -5'
5971 3' -54 NC_001806.1 + 25486 0.67 0.925551
Target:  5'- gAGGUaGAGAugcccgaacccccCCGAgGGAGCGCGGgaCGCGc -3'
miRNA:   3'- -UCCA-CUUU-------------GGUUgUCUCGUGCC--GCGU- -5'
5971 3' -54 NC_001806.1 + 24994 0.73 0.627181
Target:  5'- gGGGUGcuguaacGGGCCGggACGGGGCGgGGCGCu -3'
miRNA:   3'- -UCCAC-------UUUGGU--UGUCUCGUgCCGCGu -5'
5971 3' -54 NC_001806.1 + 23952 0.68 0.874369
Target:  5'- uGGG-GggGCCGccggagugguccGCcGAGCGCGGCGg- -3'
miRNA:   3'- -UCCaCuuUGGU------------UGuCUCGUGCCGCgu -5'
5971 3' -54 NC_001806.1 + 21772 0.68 0.866837
Target:  5'- cGGGcGggGuCCGuc-GAGCGCGGCGCc -3'
miRNA:   3'- -UCCaCuuU-GGUuguCUCGUGCCGCGu -5'
5971 3' -54 NC_001806.1 + 21208 0.68 0.866837
Target:  5'- cGGGUGggGCgcggaGACGGAGgAgGGCGgGg -3'
miRNA:   3'- -UCCACuuUGg----UUGUCUCgUgCCGCgU- -5'
5971 3' -54 NC_001806.1 + 20714 0.7 0.789955
Target:  5'- gGGGUGGGcccGCCGGgGGGGCGgGGgGCc -3'
miRNA:   3'- -UCCACUU---UGGUUgUCUCGUgCCgCGu -5'
5971 3' -54 NC_001806.1 + 20633 0.69 0.851115
Target:  5'- gGGGUucGACCAACGGGcCGCGGC-CAc -3'
miRNA:   3'- -UCCAcuUUGGUUGUCUcGUGCCGcGU- -5'
5971 3' -54 NC_001806.1 + 20546 0.71 0.721537
Target:  5'- cGGUaauGAGauGCCAuGCGGGGCGgGGCGCGg -3'
miRNA:   3'- uCCA---CUU--UGGU-UGUCUCGUgCCGCGU- -5'
5971 3' -54 NC_001806.1 + 20417 0.72 0.711362
Target:  5'- cGGG-GAcGGCCAACGGGcGCGCGGgGCu -3'
miRNA:   3'- -UCCaCU-UUGGUUGUCU-CGUGCCgCGu -5'
5971 3' -54 NC_001806.1 + 20186 0.72 0.689777
Target:  5'- ---cGggGCCGGCGcggagucGGGCACGGCGCc -3'
miRNA:   3'- uccaCuuUGGUUGU-------CUCGUGCCGCGu -5'
5971 3' -54 NC_001806.1 + 19096 0.66 0.941418
Target:  5'- uGGGcuUGggGCCGACGGGGUggGG-GCc -3'
miRNA:   3'- -UCC--ACuuUGGUUGUCUCGugCCgCGu -5'
5971 3' -54 NC_001806.1 + 10092 0.69 0.850307
Target:  5'- cAGGcGAGAcguCCAcguacucGCGGcGCACGGCGCGu -3'
miRNA:   3'- -UCCaCUUU---GGU-------UGUCuCGUGCCGCGU- -5'
5971 3' -54 NC_001806.1 + 5107 0.73 0.607299
Target:  5'- cGGUGggGCCcGgGGAGC-CGGgGCGc -3'
miRNA:   3'- uCCACuuUGGuUgUCUCGuGCCgCGU- -5'
5971 3' -54 NC_001806.1 + 4887 0.72 0.711362
Target:  5'- ---gGAGGCCAGCAGAGCcagcugucGCGGCGa- -3'
miRNA:   3'- uccaCUUUGGUUGUCUCG--------UGCCGCgu -5'
5971 3' -54 NC_001806.1 + 4662 0.7 0.771006
Target:  5'- cGGcuGGGCCGGCGG-GCGCGGCGaCAg -3'
miRNA:   3'- uCCacUUUGGUUGUCuCGUGCCGC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.