Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5971 | 3' | -54 | NC_001806.1 | + | 3718 | 0.7 | 0.79921 |
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Target: 5'- ------cGCCAACAGgggcgcguaGGCGCGGCGCAg -3' miRNA: 3'- uccacuuUGGUUGUC---------UCGUGCCGCGU- -5' |
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| 5971 | 3' | -54 | NC_001806.1 | + | 3459 | 0.67 | 0.902181 |
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Target: 5'- cGGccacGcgGCCGGCcuGGGCGCGGCGCc -3' miRNA: 3'- uCCa---CuuUGGUUGu-CUCGUGCCGCGu -5' |
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| 5971 | 3' | -54 | NC_001806.1 | + | 2726 | 0.7 | 0.79921 |
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Target: 5'- gGGGUcGggGCCcucGGCGG-GC-CGGCGCGa -3' miRNA: 3'- -UCCA-CuuUGG---UUGUCuCGuGCCGCGU- -5' |
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| 5971 | 3' | -54 | NC_001806.1 | + | 2612 | 0.7 | 0.79921 |
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Target: 5'- cGGGUGGu-CCGugAGcucGGcCACGGCGCGc -3' miRNA: 3'- -UCCACUuuGGUugUC---UC-GUGCCGCGU- -5' |
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| 5971 | 3' | -54 | NC_001806.1 | + | 1944 | 0.69 | 0.842939 |
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Target: 5'- nAGGUcccgcgccGCCGGcCAGcGCACGGCGCAc -3' miRNA: 3'- -UCCAcuu-----UGGUU-GUCuCGUGCCGCGU- -5' |
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| 5971 | 3' | -54 | NC_001806.1 | + | 1918 | 0.74 | 0.596859 |
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Target: 5'- cGGcccGAGGCCAGCAccGUGCGGCGCAg -3' miRNA: 3'- uCCa--CUUUGGUUGUcuCGUGCCGCGU- -5' |
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| 5971 | 3' | -54 | NC_001806.1 | + | 1511 | 0.76 | 0.466038 |
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Target: 5'- cGGgcu--CCAGCAGGGCGCGgGCGCAa -3' miRNA: 3'- uCCacuuuGGUUGUCUCGUGC-CGCGU- -5' |
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| 5971 | 3' | -54 | NC_001806.1 | + | 404 | 1.08 | 0.004293 |
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Target: 5'- cAGGUGAAACCAACAGAGCACGGCGCAc -3' miRNA: 3'- -UCCACUUUGGUUGUCUCGUGCCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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