miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5971 3' -54 NC_001806.1 + 404 1.08 0.004293
Target:  5'- cAGGUGAAACCAACAGAGCACGGCGCAc -3'
miRNA:   3'- -UCCACUUUGGUUGUCUCGUGCCGCGU- -5'
5971 3' -54 NC_001806.1 + 52609 0.79 0.325964
Target:  5'- gGGGUGGGACCuguCGGgaaaagauucagcgGGCGCGGCGCGa -3'
miRNA:   3'- -UCCACUUUGGuu-GUC--------------UCGUGCCGCGU- -5'
5971 3' -54 NC_001806.1 + 1511 0.76 0.466038
Target:  5'- cGGgcu--CCAGCAGGGCGCGgGCGCAa -3'
miRNA:   3'- uCCacuuuGGUUGUCUCGUGC-CGCGU- -5'
5971 3' -54 NC_001806.1 + 109154 0.75 0.495091
Target:  5'- cGGGUGAGGCCAGagucGGCGCGGgGCu -3'
miRNA:   3'- -UCCACUUUGGUUguc-UCGUGCCgCGu -5'
5971 3' -54 NC_001806.1 + 127897 0.75 0.535042
Target:  5'- uAGGcgcGGGugCAGCGGAGCACGGC-CAu -3'
miRNA:   3'- -UCCa--CUUugGUUGUCUCGUGCCGcGU- -5'
5971 3' -54 NC_001806.1 + 1918 0.74 0.596859
Target:  5'- cGGcccGAGGCCAGCAccGUGCGGCGCAg -3'
miRNA:   3'- uCCa--CUUUGGUUGUcuCGUGCCGCGU- -5'
5971 3' -54 NC_001806.1 + 5107 0.73 0.607299
Target:  5'- cGGUGggGCCcGgGGAGC-CGGgGCGc -3'
miRNA:   3'- uCCACuuUGGuUgUCUCGuGCCgCGU- -5'
5971 3' -54 NC_001806.1 + 24994 0.73 0.627181
Target:  5'- gGGGUGcuguaacGGGCCGggACGGGGCGgGGCGCu -3'
miRNA:   3'- -UCCAC-------UUUGGU--UGUCUCGUgCCGCGu -5'
5971 3' -54 NC_001806.1 + 20186 0.72 0.689777
Target:  5'- ---cGggGCCGGCGcggagucGGGCACGGCGCc -3'
miRNA:   3'- uccaCuuUGGUUGU-------CUCGUGCCGCGu -5'
5971 3' -54 NC_001806.1 + 20417 0.72 0.711362
Target:  5'- cGGG-GAcGGCCAACGGGcGCGCGGgGCu -3'
miRNA:   3'- -UCCaCU-UUGGUUGUCU-CGUGCCgCGu -5'
5971 3' -54 NC_001806.1 + 4887 0.72 0.711362
Target:  5'- ---gGAGGCCAGCAGAGCcagcugucGCGGCGa- -3'
miRNA:   3'- uccaCUUUGGUUGUCUCG--------UGCCGCgu -5'
5971 3' -54 NC_001806.1 + 20546 0.71 0.721537
Target:  5'- cGGUaauGAGauGCCAuGCGGGGCGgGGCGCGg -3'
miRNA:   3'- uCCA---CUU--UGGU-UGUCUCGUgCCGCGU- -5'
5971 3' -54 NC_001806.1 + 143364 0.71 0.741634
Target:  5'- gAGGgacgGggGCCGGCAGAcCgACGGCGaCAa -3'
miRNA:   3'- -UCCa---CuuUGGUUGUCUcG-UGCCGC-GU- -5'
5971 3' -54 NC_001806.1 + 142167 0.71 0.741634
Target:  5'- gGGGUGggGuCCGACGuggcgaugauGGGCGgCGGCGUg -3'
miRNA:   3'- -UCCACuuU-GGUUGU----------CUCGU-GCCGCGu -5'
5971 3' -54 NC_001806.1 + 147622 0.71 0.761332
Target:  5'- cAGGgacGAGugCGACuGGGGCacACGGCGCGc -3'
miRNA:   3'- -UCCa--CUUugGUUG-UCUCG--UGCCGCGU- -5'
5971 3' -54 NC_001806.1 + 40014 0.7 0.770044
Target:  5'- gAGGUGcugcaggGAACgGACGgcGAGCAUGGCGUg -3'
miRNA:   3'- -UCCAC-------UUUGgUUGU--CUCGUGCCGCGu -5'
5971 3' -54 NC_001806.1 + 4662 0.7 0.771006
Target:  5'- cGGcuGGGCCGGCGG-GCGCGGCGaCAg -3'
miRNA:   3'- uCCacUUUGGUUGUCuCGUGCCGC-GU- -5'
5971 3' -54 NC_001806.1 + 20714 0.7 0.789955
Target:  5'- gGGGUGGGcccGCCGGgGGGGCGgGGgGCc -3'
miRNA:   3'- -UCCACUU---UGGUUgUCUCGUgCCgCGu -5'
5971 3' -54 NC_001806.1 + 34300 0.7 0.79921
Target:  5'- gGGGUuu-AgCGGCGGGGgGCGGCGCGc -3'
miRNA:   3'- -UCCAcuuUgGUUGUCUCgUGCCGCGU- -5'
5971 3' -54 NC_001806.1 + 2726 0.7 0.79921
Target:  5'- gGGGUcGggGCCcucGGCGG-GC-CGGCGCGa -3'
miRNA:   3'- -UCCA-CuuUGG---UUGUCuCGuGCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.