miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5971 3' -54 NC_001806.1 + 144216 0.67 0.902181
Target:  5'- ---cGAcACC-GCAGAGC-CGGCGCGc -3'
miRNA:   3'- uccaCUuUGGuUGUCUCGuGCCGCGU- -5'
5971 3' -54 NC_001806.1 + 151278 0.68 0.895585
Target:  5'- cGGUgGggGCCGGggcCGGGGgGCGGCgGCGg -3'
miRNA:   3'- uCCA-CuuUGGUU---GUCUCgUGCCG-CGU- -5'
5971 3' -54 NC_001806.1 + 151181 0.68 0.895585
Target:  5'- cGGUGAcGCgcaGGCGGAGgGCgaGGCGCGg -3'
miRNA:   3'- uCCACUuUGg--UUGUCUCgUG--CCGCGU- -5'
5971 3' -54 NC_001806.1 + 67780 0.68 0.895585
Target:  5'- cGGUGGguuguguuGGCCGACuG-GCcCGGCGCGu -3'
miRNA:   3'- uCCACU--------UUGGUUGuCuCGuGCCGCGU- -5'
5971 3' -54 NC_001806.1 + 31754 0.68 0.895585
Target:  5'- uGGUGuuAACC-ACAGAGCcGCGGCcCGg -3'
miRNA:   3'- uCCACu-UUGGuUGUCUCG-UGCCGcGU- -5'
5971 3' -54 NC_001806.1 + 84243 0.68 0.888748
Target:  5'- --cUGAAACaCGGCcgGGGGCGCGgGCGCAc -3'
miRNA:   3'- uccACUUUG-GUUG--UCUCGUGC-CGCGU- -5'
5971 3' -54 NC_001806.1 + 84132 0.68 0.874369
Target:  5'- uGG-GAAGCgCAucGCGGGGCACGcacGCGCGa -3'
miRNA:   3'- uCCaCUUUG-GU--UGUCUCGUGC---CGCGU- -5'
5971 3' -54 NC_001806.1 + 57166 0.68 0.874369
Target:  5'- gGGGUGcgcGCauaaAGCccAGCACGGCGCAc -3'
miRNA:   3'- -UCCACuu-UGg---UUGucUCGUGCCGCGU- -5'
5971 3' -54 NC_001806.1 + 23952 0.68 0.874369
Target:  5'- uGGG-GggGCCGccggagugguccGCcGAGCGCGGCGg- -3'
miRNA:   3'- -UCCaCuuUGGU------------UGuCUCGUGCCGCgu -5'
5971 3' -54 NC_001806.1 + 36228 0.68 0.874369
Target:  5'- --cUGGAGCUGAUGGAGCGCaGGUGCu -3'
miRNA:   3'- uccACUUUGGUUGUCUCGUG-CCGCGu -5'
5971 3' -54 NC_001806.1 + 76723 0.68 0.866837
Target:  5'- uGGUG-GACCAGaCGGAGaa-GGCGCGc -3'
miRNA:   3'- uCCACuUUGGUU-GUCUCgugCCGCGU- -5'
5971 3' -54 NC_001806.1 + 21208 0.68 0.866837
Target:  5'- cGGGUGggGCgcggaGACGGAGgAgGGCGgGg -3'
miRNA:   3'- -UCCACuuUGg----UUGUCUCgUgCCGCgU- -5'
5971 3' -54 NC_001806.1 + 21772 0.68 0.866837
Target:  5'- cGGGcGggGuCCGuc-GAGCGCGGCGCc -3'
miRNA:   3'- -UCCaCuuU-GGUuguCUCGUGCCGCGu -5'
5971 3' -54 NC_001806.1 + 112547 0.68 0.866072
Target:  5'- uGGUccugaacGggGCCAACcuGGuCACGGCGCu -3'
miRNA:   3'- uCCA-------CuuUGGUUGucUC-GUGCCGCGu -5'
5971 3' -54 NC_001806.1 + 104681 0.69 0.859083
Target:  5'- aGGGUGAGauAUCGGcCGGGGaCGCGGCGg- -3'
miRNA:   3'- -UCCACUU--UGGUU-GUCUC-GUGCCGCgu -5'
5971 3' -54 NC_001806.1 + 95297 0.69 0.859083
Target:  5'- gGGGgcggGggGCgCGGCGGAcGCgcccaaggGCGGCGCGg -3'
miRNA:   3'- -UCCa---CuuUG-GUUGUCU-CG--------UGCCGCGU- -5'
5971 3' -54 NC_001806.1 + 136900 0.69 0.859083
Target:  5'- gGGGUGAAccuuuacCCAGCcguccucgggGGAGCACaGCGCu -3'
miRNA:   3'- -UCCACUUu------GGUUG----------UCUCGUGcCGCGu -5'
5971 3' -54 NC_001806.1 + 128247 0.69 0.858296
Target:  5'- cAGGaaGAcgcCCAACAGcaaggcguuugucAGCACGGCGCGa -3'
miRNA:   3'- -UCCa-CUuu-GGUUGUC-------------UCGUGCCGCGU- -5'
5971 3' -54 NC_001806.1 + 20633 0.69 0.851115
Target:  5'- gGGGUucGACCAACGGGcCGCGGC-CAc -3'
miRNA:   3'- -UCCAcuUUGGUUGUCUcGUGCCGcGU- -5'
5971 3' -54 NC_001806.1 + 10092 0.69 0.850307
Target:  5'- cAGGcGAGAcguCCAcguacucGCGGcGCACGGCGCGu -3'
miRNA:   3'- -UCCaCUUU---GGU-------UGUCuCGUGCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.