miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5972 3' -56.8 NC_001806.1 + 54872 0.66 0.894641
Target:  5'- cGGGGGGacCuGGCcgCcgCaGCCUCGGa -3'
miRNA:   3'- -CCCCCCaaGcCCGuaGa-GaUGGAGUC- -5'
5972 3' -56.8 NC_001806.1 + 126243 0.66 0.892673
Target:  5'- cGGGGauGGUcgGGGCGUCccuggauauucucgUCUGuCCUCGGg -3'
miRNA:   3'- -CCCC--CCAagCCCGUAG--------------AGAU-GGAGUC- -5'
5972 3' -56.8 NC_001806.1 + 41829 0.66 0.888002
Target:  5'- cGGGGG--CGGGCGUCaggGCCcCGGg -3'
miRNA:   3'- cCCCCCaaGCCCGUAGagaUGGaGUC- -5'
5972 3' -56.8 NC_001806.1 + 117068 0.66 0.881141
Target:  5'- gGGGGGGUgggggUGGGCAUCcagggagaaACCcCAGc -3'
miRNA:   3'- -CCCCCCAa----GCCCGUAGaga------UGGaGUC- -5'
5972 3' -56.8 NC_001806.1 + 95958 0.67 0.851581
Target:  5'- cGGGGGGcUCGGGUgcugAUUgg-GCCgUCAGc -3'
miRNA:   3'- -CCCCCCaAGCCCG----UAGagaUGG-AGUC- -5'
5972 3' -56.8 NC_001806.1 + 83277 0.67 0.851581
Target:  5'- aGGGGGUUCGGGCGggcgCggaggACCccgCAa -3'
miRNA:   3'- cCCCCCAAGCCCGUa---Gaga--UGGa--GUc -5'
5972 3' -56.8 NC_001806.1 + 148157 0.68 0.783591
Target:  5'- cGGGGGGcgCGgcGGCGcCUCUGCgUgGGg -3'
miRNA:   3'- -CCCCCCaaGC--CCGUaGAGAUGgAgUC- -5'
5972 3' -56.8 NC_001806.1 + 86045 0.69 0.73651
Target:  5'- cGGGGGGggCGGGC-UCguccCCUgGGg -3'
miRNA:   3'- -CCCCCCaaGCCCGuAGagauGGAgUC- -5'
5972 3' -56.8 NC_001806.1 + 15059 0.7 0.707123
Target:  5'- uGGGGGGUgucuUCGGGCgacugGUCUCgggGCgCgCGGg -3'
miRNA:   3'- -CCCCCCA----AGCCCG-----UAGAGa--UG-GaGUC- -5'
5972 3' -56.8 NC_001806.1 + 33655 0.71 0.646904
Target:  5'- gGGGGGGUgucgCGGGCcGUCUgCUgGCCcgCGGc -3'
miRNA:   3'- -CCCCCCAa---GCCCG-UAGA-GA-UGGa-GUC- -5'
5972 3' -56.8 NC_001806.1 + 31374 0.72 0.59632
Target:  5'- aGGGGGGggUCGGGCgcugggugGUCUCUgGCCg--- -3'
miRNA:   3'- -CCCCCCa-AGCCCG--------UAGAGA-UGGaguc -5'
5972 3' -56.8 NC_001806.1 + 2865 0.72 0.586252
Target:  5'- aGGGGGGcgCGGGCGUCcgaGCCggGGg -3'
miRNA:   3'- -CCCCCCaaGCCCGUAGagaUGGagUC- -5'
5972 3' -56.8 NC_001806.1 + 756 1.1 0.002241
Target:  5'- gGGGGGGUUCGGGCAUCUCUACCUCAGu -3'
miRNA:   3'- -CCCCCCAAGCCCGUAGAGAUGGAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.