miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5975 3' -56 NC_001806.1 + 111030 0.66 0.921657
Target:  5'- aUCGUcUGCCGUUGUCGgcgCC-CGUgUUUu -3'
miRNA:   3'- -AGCA-ACGGCAGCAGCa--GGaGCAgGAG- -5'
5975 3' -56 NC_001806.1 + 57764 0.66 0.921657
Target:  5'- aCGggccGCCGUCc-CGUCCgccgcaucggagUCGUCCUCc -3'
miRNA:   3'- aGCaa--CGGCAGcaGCAGG------------AGCAGGAG- -5'
5975 3' -56 NC_001806.1 + 66566 0.66 0.904169
Target:  5'- uUUGggGCCGggggCGUCauGUCCUCGgugCCg- -3'
miRNA:   3'- -AGCaaCGGCa---GCAG--CAGGAGCa--GGag -5'
5975 3' -56 NC_001806.1 + 57332 0.67 0.870511
Target:  5'- gUGUgGCCGUcCGUCGUcgacccgucCCUggcCGUCCUCc -3'
miRNA:   3'- aGCAaCGGCA-GCAGCA---------GGA---GCAGGAG- -5'
5975 3' -56 NC_001806.1 + 124499 0.68 0.839813
Target:  5'- gUCGgacGCCGUC-UCGcUCCggcgggcCGUCCUCg -3'
miRNA:   3'- -AGCaa-CGGCAGcAGC-AGGa------GCAGGAG- -5'
5975 3' -56 NC_001806.1 + 5009 0.68 0.823334
Target:  5'- gUCGUgGUCGggGUCGUCCcCGcCCUCc -3'
miRNA:   3'- -AGCAaCGGCagCAGCAGGaGCaGGAG- -5'
5975 3' -56 NC_001806.1 + 58643 0.68 0.823334
Target:  5'- aCGgccucGCCGUCGgaCGUCgUCGUCCa- -3'
miRNA:   3'- aGCaa---CGGCAGCa-GCAGgAGCAGGag -5'
5975 3' -56 NC_001806.1 + 4768 0.69 0.814837
Target:  5'- gCGUcgGCugCGUCGUCGUaCUCGUCCcCg -3'
miRNA:   3'- aGCAa-CG--GCAGCAGCAgGAGCAGGaG- -5'
5975 3' -56 NC_001806.1 + 8805 0.69 0.806178
Target:  5'- aCGagGaaGUCGUUGgccgCCUCGUCUUCg -3'
miRNA:   3'- aGCaaCggCAGCAGCa---GGAGCAGGAG- -5'
5975 3' -56 NC_001806.1 + 1202 0.69 0.788406
Target:  5'- gUUGUUGCCGUUuauugCGUCUUCGggUCUCa -3'
miRNA:   3'- -AGCAACGGCAGca---GCAGGAGCa-GGAG- -5'
5975 3' -56 NC_001806.1 + 61591 0.7 0.741727
Target:  5'- aCGagGCCGUCGUgugcaCGgCCUCGUCC-Cg -3'
miRNA:   3'- aGCaaCGGCAGCA-----GCaGGAGCAGGaG- -5'
5975 3' -56 NC_001806.1 + 21670 0.7 0.72234
Target:  5'- cUCGU--CC-UCGUCGUCCgcauccucuUCGUCCUCg -3'
miRNA:   3'- -AGCAacGGcAGCAGCAGG---------AGCAGGAG- -5'
5975 3' -56 NC_001806.1 + 87337 0.7 0.72234
Target:  5'- ----cGCCcuccUCGcguUCGUCCUCGUCCUCc -3'
miRNA:   3'- agcaaCGGc---AGC---AGCAGGAGCAGGAG- -5'
5975 3' -56 NC_001806.1 + 151345 0.71 0.702651
Target:  5'- cUGUccgGCCaGUCGUCGUCaUCGUCgUCg -3'
miRNA:   3'- aGCAa--CGG-CAGCAGCAGgAGCAGgAG- -5'
5975 3' -56 NC_001806.1 + 148744 0.71 0.662646
Target:  5'- aCGUcGCCcUCGUCGcUCCcccCGUCCUCu -3'
miRNA:   3'- aGCAaCGGcAGCAGC-AGGa--GCAGGAG- -5'
5975 3' -56 NC_001806.1 + 16700 0.72 0.612155
Target:  5'- cCGgauagGCCa-CGUCGUCCggggCGUCCUCg -3'
miRNA:   3'- aGCaa---CGGcaGCAGCAGGa---GCAGGAG- -5'
5975 3' -56 NC_001806.1 + 10429 0.72 0.612155
Target:  5'- gCGggagUGCCGgCGagacuuUCGUCCUCGcCCUCg -3'
miRNA:   3'- aGCa---ACGGCaGC------AGCAGGAGCaGGAG- -5'
5975 3' -56 NC_001806.1 + 1286 0.75 0.484531
Target:  5'- ----cGCCGcCGUCGUCUUCGUCC-Ca -3'
miRNA:   3'- agcaaCGGCaGCAGCAGGAGCAGGaG- -5'
5975 3' -56 NC_001806.1 + 148366 0.78 0.310756
Target:  5'- gUCGUccagGUCGUCGUCaUCCUCGUCCg- -3'
miRNA:   3'- -AGCAa---CGGCAGCAGcAGGAGCAGGag -5'
5975 3' -56 NC_001806.1 + 4527 1.11 0.002645
Target:  5'- gUCGUUGCCGUCGUCGUCCUCGUCCUCg -3'
miRNA:   3'- -AGCAACGGCAGCAGCAGGAGCAGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.