Results 41 - 60 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5975 | 5' | -55.2 | NC_001806.1 | + | 140432 | 0.66 | 0.932518 |
Target: 5'- gUGAGGGuggcaUGggGGGGggGCGGuuacuCGGCc -3' miRNA: 3'- uGCUCCU-----GCuuCUCCuaCGCCu----GCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 64652 | 0.66 | 0.936977 |
Target: 5'- gUGAGG-CGAGGGGGGcugccgaauguccUGgGGGgGACa -3' miRNA: 3'- uGCUCCuGCUUCUCCU-------------ACgCCUgCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 71915 | 0.66 | 0.937461 |
Target: 5'- uCGAGGGauguuugguCGAGGGGGGcgaGUGGACGcGCg -3' miRNA: 3'- uGCUCCU---------GCUUCUCCUa--CGCCUGC-UG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 25946 | 0.66 | 0.937461 |
Target: 5'- gUGGGGGCGggGccgcGGGA-GCGGGgGGa -3' miRNA: 3'- uGCUCCUGCuuC----UCCUaCGCCUgCUg -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 69126 | 0.66 | 0.937461 |
Target: 5'- cCGGGGACGcuaauGGcgcgcGUGCGGACgGACg -3' miRNA: 3'- uGCUCCUGCuucu-CC-----UACGCCUG-CUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 8610 | 0.67 | 0.910358 |
Target: 5'- uGCGGGGugAUGggGGGGAaGaGaGACGACa -3' miRNA: 3'- -UGCUCC--UGCuuCUCCUaCgC-CUGCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 11777 | 0.67 | 0.904224 |
Target: 5'- aGCGGGGAUGGuggucGAGGGaGCGGG-GAUg -3' miRNA: 3'- -UGCUCCUGCUu----CUCCUaCGCCUgCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 51679 | 0.68 | 0.87738 |
Target: 5'- aGCGGccuGGACGuccccGAGGAccccGUGGGCGACu -3' miRNA: 3'- -UGCU---CCUGCuu---CUCCUa---CGCCUGCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 34384 | 0.67 | 0.88443 |
Target: 5'- cCGAGGugGGugGGuGGGcgGCGGugGcCg -3' miRNA: 3'- uGCUCCugCU--UC-UCCuaCGCCugCuG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 57155 | 0.67 | 0.890585 |
Target: 5'- cGCGAGG--GGAGGGGGUGCGcGcauaaagcccagcACGGCg -3' miRNA: 3'- -UGCUCCugCUUCUCCUACGC-C-------------UGCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 147180 | 0.67 | 0.891257 |
Target: 5'- cCGAGGaggcggaaGCgGAGGAGGAcGCGGccccgGCGGCg -3' miRNA: 3'- uGCUCC--------UG-CUUCUCCUaCGCC-----UGCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 147265 | 0.67 | 0.891257 |
Target: 5'- -aGAGGAgGAAGAGGcgGaggccgccgaGGACGuCa -3' miRNA: 3'- ugCUCCUgCUUCUCCuaCg---------CCUGCuG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 5757 | 0.67 | 0.891257 |
Target: 5'- aACGAGGaACGGGcAGGggGCGGGgcccgggcccCGACu -3' miRNA: 3'- -UGCUCC-UGCUUcUCCuaCGCCU----------GCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 141968 | 0.67 | 0.891257 |
Target: 5'- -gGAGGGuCGggGGGc--GCGGACGAg -3' miRNA: 3'- ugCUCCU-GCuuCUCcuaCGCCUGCUg -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 151098 | 0.67 | 0.891257 |
Target: 5'- cGCGGGGGuCGcGGGGGucGCGGGgGGCu -3' miRNA: 3'- -UGCUCCU-GCuUCUCCuaCGCCUgCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 29445 | 0.67 | 0.897856 |
Target: 5'- -gGAGGcCGAGGAGGccgucaggGCGGgcACGGCc -3' miRNA: 3'- ugCUCCuGCUUCUCCua------CGCC--UGCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 71405 | 0.67 | 0.897856 |
Target: 5'- uCGAGGACGAcGA-GAUGauccCGGAgGACa -3' miRNA: 3'- uGCUCCUGCUuCUcCUAC----GCCUgCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 77847 | 0.67 | 0.897856 |
Target: 5'- gGCGA-GAUGggGGgccucgauGGAUGCGG-CGGCc -3' miRNA: 3'- -UGCUcCUGCuuCU--------CCUACGCCuGCUG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 147696 | 0.67 | 0.897856 |
Target: 5'- cGCGGGGGCGGgccccGGAGGcgGCGcuCGcACg -3' miRNA: 3'- -UGCUCCUGCU-----UCUCCuaCGCcuGC-UG- -5' |
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5975 | 5' | -55.2 | NC_001806.1 | + | 20712 | 0.67 | 0.904224 |
Target: 5'- uCGGGGugGGcccgccGGGGGG-GCGGGgGGCc -3' miRNA: 3'- uGCUCCugCU------UCUCCUaCGCCUgCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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