miRNA display CGI


Results 81 - 100 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 3' -57.4 NC_001806.1 + 66426 0.7 0.619699
Target:  5'- gUGCgGUGGGGcGCCcccGCAGGuccggcuGCCAGCg -3'
miRNA:   3'- gAUGgUACCUC-CGGu--CGUCU-------CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 51609 0.7 0.630989
Target:  5'- gCUGCCc-GGcGGCCAGUuGAGCCGcGCc -3'
miRNA:   3'- -GAUGGuaCCuCCGGUCGuCUCGGU-CG- -5'
5976 3' -57.4 NC_001806.1 + 84433 0.7 0.630989
Target:  5'- -aGCCcgGGgacggGGGCCGGUuuguGAGCCuGCu -3'
miRNA:   3'- gaUGGuaCC-----UCCGGUCGu---CUCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 85981 0.7 0.630989
Target:  5'- cCU-CCcgGGGGGUCGGCAG-GCgaCGGCg -3'
miRNA:   3'- -GAuGGuaCCUCCGGUCGUCuCG--GUCG- -5'
5976 3' -57.4 NC_001806.1 + 135102 0.71 0.539538
Target:  5'- -gACCggGGAGGggGGCGGGGgCAGCg -3'
miRNA:   3'- gaUGGuaCCUCCggUCGUCUCgGUCG- -5'
5976 3' -57.4 NC_001806.1 + 24883 0.71 0.539538
Target:  5'- -gGCCGUGGAGGUgcugggGGCGGAGgCgGGCu -3'
miRNA:   3'- gaUGGUACCUCCGg-----UCGUCUC-GgUCG- -5'
5976 3' -57.4 NC_001806.1 + 147771 0.71 0.529605
Target:  5'- -gGCCGcggacgcgGGGGGCCcggggcggggGGCGGAGCCuGGCa -3'
miRNA:   3'- gaUGGUa-------CCUCCGG----------UCGUCUCGG-UCG- -5'
5976 3' -57.4 NC_001806.1 + 41224 0.71 0.519741
Target:  5'- cCUAaaGUGGcccaGGGCCucGUGGAGCCGGCg -3'
miRNA:   3'- -GAUggUACC----UCCGGu-CGUCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 74662 0.71 0.519741
Target:  5'- -gGCCAUGGAuGCCgccaagcugacGGCAGAGCUcGCc -3'
miRNA:   3'- gaUGGUACCUcCGG-----------UCGUCUCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 33359 0.71 0.549533
Target:  5'- gCUGCag-GGGGGCCcGgAGAGCCgcGGCa -3'
miRNA:   3'- -GAUGguaCCUCCGGuCgUCUCGG--UCG- -5'
5976 3' -57.4 NC_001806.1 + 30638 0.71 0.549533
Target:  5'- -gGCCggGGGGGCgCGGcCAGGGUgGGCc -3'
miRNA:   3'- gaUGGuaCCUCCG-GUC-GUCUCGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 132700 0.71 0.57374
Target:  5'- -cGCgGUGGGGGCCAGgGucguccuccccccgcGAGCUGGCc -3'
miRNA:   3'- gaUGgUACCUCCGGUCgU---------------CUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 141817 0.71 0.569686
Target:  5'- -gGCCA-GGAGGUgGGCGGuuaagggguucGCCAGCu -3'
miRNA:   3'- gaUGGUaCCUCCGgUCGUCu----------CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 84841 0.71 0.566651
Target:  5'- cCUAUCAcggcaaGGAGcGCCGGCGGucgcgcuccucugcGGCCGGCg -3'
miRNA:   3'- -GAUGGUa-----CCUC-CGGUCGUC--------------UCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 151276 0.71 0.559584
Target:  5'- -gGCgGUGGGGGCCggGGCcgGGGGgCGGCg -3'
miRNA:   3'- gaUGgUACCUCCGG--UCG--UCUCgGUCG- -5'
5976 3' -57.4 NC_001806.1 + 136327 0.71 0.559584
Target:  5'- -cGCgCGUGGAGucgaaggccagcGCCAGCucaaaaaacccGGGGCCGGCg -3'
miRNA:   3'- gaUG-GUACCUC------------CGGUCG-----------UCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 119560 0.72 0.481061
Target:  5'- -cGCCAUGGGGGCgGcugacgcagauGCGGuGCUGGCg -3'
miRNA:   3'- gaUGGUACCUCCGgU-----------CGUCuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 136991 0.73 0.452992
Target:  5'- --gUCAUGGcggcGGCCGGCGGGgagcGCCAGCu -3'
miRNA:   3'- gauGGUACCu---CCGGUCGUCU----CGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 131974 0.73 0.434782
Target:  5'- -gGCCcUGGAGcGCCAGaCcGGGCCGGUg -3'
miRNA:   3'- gaUGGuACCUC-CGGUC-GuCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 70534 0.73 0.434782
Target:  5'- -gGCCAUGGGGGaCGcGguGAGUCAGUa -3'
miRNA:   3'- gaUGGUACCUCCgGU-CguCUCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.