miRNA display CGI


Results 81 - 100 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5976 3' -57.4 NC_001806.1 + 128709 0.66 0.824823
Target:  5'- -gGCCGUGGAGuucaccCCGGCAuaaGAGCUcgccuGGCg -3'
miRNA:   3'- gaUGGUACCUCc-----GGUCGU---CUCGG-----UCG- -5'
5976 3' -57.4 NC_001806.1 + 22562 0.66 0.833249
Target:  5'- -cGCUgacGGGGGCCGcGgGGAGCCccGGCg -3'
miRNA:   3'- gaUGGua-CCUCCGGU-CgUCUCGG--UCG- -5'
5976 3' -57.4 NC_001806.1 + 50509 0.66 0.833249
Target:  5'- --gUCGUGGGGGCCgAGCAcGAGgCgcugGGCg -3'
miRNA:   3'- gauGGUACCUCCGG-UCGU-CUCgG----UCG- -5'
5976 3' -57.4 NC_001806.1 + 4746 0.66 0.833249
Target:  5'- -gGCCGgggcccGGucGCCGGCGGcGUCGGCu -3'
miRNA:   3'- gaUGGUa-----CCucCGGUCGUCuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 55243 0.66 0.833249
Target:  5'- aUACaacGGAgGGUCGGCGcccGGGCCGGCc -3'
miRNA:   3'- gAUGguaCCU-CCGGUCGU---CUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 129701 0.66 0.833249
Target:  5'- -cGCCucuccGGAGGCCcGgGGGGCCAcGUu -3'
miRNA:   3'- gaUGGua---CCUCCGGuCgUCUCGGU-CG- -5'
5976 3' -57.4 NC_001806.1 + 128529 0.66 0.841491
Target:  5'- -gGCCAUGcGGGCC-GCAGccagacggcGGCCcGCg -3'
miRNA:   3'- gaUGGUACcUCCGGuCGUC---------UCGGuCG- -5'
5976 3' -57.4 NC_001806.1 + 148148 0.66 0.841491
Target:  5'- -cGCCcgucacgGGGGGCgCGGCGGcGCCucuGCg -3'
miRNA:   3'- gaUGGua-----CCUCCG-GUCGUCuCGGu--CG- -5'
5976 3' -57.4 NC_001806.1 + 135259 0.66 0.844734
Target:  5'- cCUACCcgGGGGGCCcgaAGCacugacucaaaguagGGGGCgacgaaugCGGCg -3'
miRNA:   3'- -GAUGGuaCCUCCGG---UCG---------------UCUCG--------GUCG- -5'
5976 3' -57.4 NC_001806.1 + 98928 0.66 0.819683
Target:  5'- uCUGCCAUGGAgcgcacggaacacaaGGCCAaGaagaAGGGCacgAGCg -3'
miRNA:   3'- -GAUGGUACCU---------------CCGGU-Cg---UCUCGg--UCG- -5'
5976 3' -57.4 NC_001806.1 + 2721 0.66 0.816222
Target:  5'- --cCCAgggGGucgGGGCCcucGGCGG-GCCGGCg -3'
miRNA:   3'- gauGGUa--CC---UCCGG---UCGUCuCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 55615 0.66 0.804789
Target:  5'- -gGgCGUGGAGGUgGGCuuggggguuguuggGGGGCUGGCc -3'
miRNA:   3'- gaUgGUACCUCCGgUCG--------------UCUCGGUCG- -5'
5976 3' -57.4 NC_001806.1 + 65619 0.66 0.807452
Target:  5'- gUACaCGUGGuGGCCgugGGCgagaGGGGCCccGGCg -3'
miRNA:   3'- gAUG-GUACCuCCGG---UCG----UCUCGG--UCG- -5'
5976 3' -57.4 NC_001806.1 + 10536 0.66 0.807452
Target:  5'- -gACCAccGAGGCCacuuGGC-GAGCCGGg -3'
miRNA:   3'- gaUGGUacCUCCGG----UCGuCUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 73457 0.66 0.807452
Target:  5'- -gGCCggGGuGGCCGGCccGGCCGccGCc -3'
miRNA:   3'- gaUGGuaCCuCCGGUCGucUCGGU--CG- -5'
5976 3' -57.4 NC_001806.1 + 133251 0.66 0.807452
Target:  5'- -gGCCGUGGGaGCCGuGCuuAGGGCCAacGCc -3'
miRNA:   3'- gaUGGUACCUcCGGU-CG--UCUCGGU--CG- -5'
5976 3' -57.4 NC_001806.1 + 34515 0.66 0.816222
Target:  5'- -gGCCcgGGGGGUgggAGCGcGGGCCGGg -3'
miRNA:   3'- gaUGGuaCCUCCGg--UCGU-CUCGGUCg -5'
5976 3' -57.4 NC_001806.1 + 77365 0.66 0.816222
Target:  5'- -cGCCAaGGccacAGGCCAGaCGGGcGCgGGCg -3'
miRNA:   3'- gaUGGUaCC----UCCGGUC-GUCU-CGgUCG- -5'
5976 3' -57.4 NC_001806.1 + 134845 0.66 0.816222
Target:  5'- -cGCCGaccUGGcgcaccucgcAGGCCAgGCGGAG-CAGCg -3'
miRNA:   3'- gaUGGU---ACC----------UCCGGU-CGUCUCgGUCG- -5'
5976 3' -57.4 NC_001806.1 + 147819 0.66 0.833249
Target:  5'- -cGCCGcgGGGGGCCuGUGGggagaGGCCGGg -3'
miRNA:   3'- gaUGGUa-CCUCCGGuCGUC-----UCGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.